Experiment summary for ENCSR573JSS
doi:10.17989/ENCSR573JSS
Alternate accession: ENCSR830NLC
Summary
- Status
- released
- Assay
- shRNA knockdown followed by RNA-seq (shRNA RNA-seq)
- Control type
- control
- Biosample summary
- Drosophila melanogaster strain mCherry_shRNA x da-Gal4 whole organism embryo 16-18 hours post synchronization at egg laying stage expressing RNAi targeting mCherry
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Nucleic acid type
- polyadenylated mRNA
- Size range
- 350-600
- Extraction method
- Trizol
- Fragmentation methods
- shearing (Covaris generic)
- Strand specificity
- unstranded
- Platform
- Illumina NextSeq 500
Attribution
modERN project
- Lab
- Susan Celniker, LBNL
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- Aliases
- susan-celniker:zfh2_Sox102F_Hr46_mCherry_16-18, susan-celniker:zfh2_Sox102F_Hr3_mCherry_16-18
- Date submitted
- March 15, 2019
- Date released
- April 25, 2019
- Submitter comment
- Processed data is currently not available for these experiments, but will be added in the future.
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Library |
---|---|---|---|---|---|
1 | 1 | Drosophila melanogaster strain mCherry_shRNA x da-Gal4 embryo 16-18 hours post synchronization at egg laying stage whole organism expressing RNAi targeting mCherry | ENCBS170KMV | ENCGM618RBJ | ENCLB363WHP |
2 | 1 | Drosophila melanogaster strain mCherry_shRNA x da-Gal4 embryo 16-18 hours post synchronization at egg laying stage whole organism expressing RNAi targeting mCherry | ENCBS104RGP | ENCGM618RBJ | ENCLB363DJM |