Experiment summary for ENCSR542ICA

doi:10.17989/ENCSR542ICA

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
nhr-27
Biosample summary
Caenorhabditis elegans strain OP208 (unc-119(ed3) III; wgIs208) whole organism young adult (78 hours) at L1 larva starved after bleaching stage genetically modified (insertion) using bombardment targeting C. elegans nhr-27
Biosample Type
whole organisms
Replication type
isogenic
Description
ChIP-seq on transgenic worms expressing nhr-27-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
Nucleic acid type
DNA
Size range
200-800
Fragmentation methods
sonication (Bioruptor generic)
Size selection method
SPRI beads
Controls

Attribution

modERN project
Lab
Kevin White, UChicago
Award
U41HG007355 (Robert Waterston, UW)
Project
modERN
External resources
Aliases
kevin-white:NHR-270_OP208_yAd
Date submitted
February 26, 2018
Date released
March 1, 2018

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Antibody
Library
11Caenorhabditis elegans strain OP208 (unc-119(ed3) III; wgIs208) mixed sex young adult (78 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans nhr-27ENCBS902YEGENCGM711VWCENCAB728YTOENCLB245RAL
21Caenorhabditis elegans strain OP208 (unc-119(ed3) III; wgIs208) mixed sex young adult (78 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans nhr-27ENCBS338SSSENCGM711VWCENCAB728YTOENCLB788WWI