Experiment summary for ENCSR542ICA
doi:10.17989/ENCSR542ICA
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- nhr-27
- Biosample summary
- Caenorhabditis elegans strain OP208 (unc-119(ed3) III; wgIs208) whole organism young adult (78 hours) at L1 larva starved after bleaching stage genetically modified (insertion) using bombardment targeting C. elegans nhr-27
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq on transgenic worms expressing nhr-27-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Size range
- 200-800
- Fragmentation methods
- sonication (Bioruptor generic)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 4000
- Controls
Attribution
modERN project
- Lab
- Kevin White, UChicago
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:NHR-270_OP208_yAd
- Date submitted
- February 26, 2018
- Date released
- March 1, 2018
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
---|---|---|---|---|---|---|
1 | 1 | Caenorhabditis elegans strain OP208 (unc-119(ed3) III; wgIs208) mixed sex young adult (78 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans nhr-27 | ENCBS902YEG | ENCGM711VWC | ENCAB728YTO | ENCLB245RAL |
2 | 1 | Caenorhabditis elegans strain OP208 (unc-119(ed3) III; wgIs208) mixed sex young adult (78 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans nhr-27 | ENCBS338SSS | ENCGM711VWC | ENCAB728YTO | ENCLB788WWI |