Experiment summary for ENCSR497FYG
doi:10.17989/ENCSR497FYG
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- EcR
- Biosample summary
- Drosophila melanogaster strain EcR-GFP whole organism pupa (24 hours) stably expressing EcR
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Size range
- 200-800
- Fragmentation methods
- sonication (Bioruptor generic)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 4000
- Controls
Attribution
modERN project
- Lab
- Kevin White, UChicago
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:EcR-GFP
- Date submitted
- April 12, 2019
- Date released
- May 16, 2019
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 3 | 1 | Drosophila melanogaster strain EcR-GFP mixed sex pupa (24 hours) whole organism stably expressing C-terminal eGFP-tagged EcR | ENCBS393EQR | ENCGM751NVW | ENCAB728YTO | ENCLB973KFV |
| 1 | 1 | Drosophila melanogaster strain EcR-GFP mixed sex pupa (24 hours) whole organism stably expressing C-terminal eGFP-tagged EcR | ENCBS090WSA | ENCGM751NVW | ENCAB728YTO | ENCLB846OUQ |
| 2 | 1 | Drosophila melanogaster strain EcR-GFP mixed sex pupa (24 hours) whole organism stably expressing C-terminal eGFP-tagged EcR | ENCBS807AXU | ENCGM751NVW | ENCAB728YTO | ENCLB861BZV |