Experiment summary for ENCSR482HXU
doi:10.17989/ENCSR482HXU
Summary
- Status
- released
- Assay
- whole-genome shotgun bisulfite sequencing (WGBS)
- Biosample summary
- Homo sapiens aorta tissue male adult (34 years)
- Biosample Type
- tissue
- Replication type
- unreplicated
- Nucleic acid type
- DNA
- Library starting quantity
- 1000ng [1-1]1000ng [1-2]5000ng [1-4]1000ng [1-3]5000ng [1-5]
- Extraction method
- QIAGEN DNeasy Blood & Tissue Kit
- Platform
- Illumina HiSeq 2500, Illumina HiSeq 2000
Attribution
Roadmap Epigenomics Mapping Consortium
- Lab
- Joe Ecker, Salk
- Award
- U01ES017166 (Bing Ren, UCSD)
- Project
- Roadmap
- External resources
- Aliases
- joe-ecker:AO-3-wgbs, roadmap-epigenomics:Whole Genome Shotgun Bisulfite Sequencing of Aorta Cells from Human STL003_Aug-06-2012_43937, roadmap-epigenomics:Whole Genome Shotgun Bisulfite Sequencing of Aorta Cells from Human STL003_Apr-02-2013_3895, roadmap-epigenomics:Whole Genome Shotgun Bisulfite Sequencing of Aorta Cells from Human STL003_Apr-02-2013_93518, roadmap-epigenomics:Whole Genome Shotgun Bisulfite Sequencing of Aorta Cells from Human STL003_Apr-02-2013_72139, roadmap-epigenomics:Whole Genome Shotgun Bisulfite Sequencing of Aorta Cells from Human STL003_Dec-30-2012_65805, roadmap-epigenomics:Whole Genome Shotgun Bisulfite Sequencing of Aorta Cells from Human STL003_Apr-02-2013_66607
- Date submitted
- July 31, 2013
- Date released
- July 31, 2013
- Reference Epigenome
- ENCSR877RKO
- Submitter comment
- The pipeline processing for this experiment is not currently able to proceed beyond alignment. Full analysis will be pursued again once the ENCODE Uniform Pipeline for WGBS data is updated.
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 1 | Homo sapiens male adult (34 years) aorta tissue | ENCBS147RHM | ENCLB301ORV |
| 1 | 2 | Homo sapiens male adult (34 years) aorta tissue | ENCBS147RHM | ENCLB659CWD |
| 1 | 4 | Homo sapiens male adult (34 years) aorta tissue | ENCBS147RHM | ENCLB577XZZ |
| 1 | 3 | Homo sapiens male adult (34 years) aorta tissue | ENCBS147RHM | ENCLB209QSM |
| 1 | 5 | Homo sapiens male adult (34 years) aorta tissue | ENCBS147RHM | ENCLB846BGL |