1. Experiments
  2. DNase-seq
  3. Homo sapiens
  4. HCT116

Experiment summary for ENCSR477IQW

doi:10.17989/ENCSR477IQW

Alternate accession: ENCSR040OJX

Summary

Status
released
Assay
DNase-seq
Biosample summary
Homo sapiens HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens CTCF
Biosample Type
cell line
Replication type
isogenic
Nucleic acid type
DNA

Attribution

ENCODE4 project
Lab
John Stamatoyannopoulos, UW
Award
UM1HG009444 (John Stamatoyannopoulos, UW)
Project
ENCODE
External resources
Date released
February 25, 2022
Gene Silencing Series
ENCSR924HST 
Submitter comment
This experiment was incorrectly submitted as a single replicate, and has been combined with ENCSR040OJX.
Tags
Search for all Experiment with internal tag RegulomeDB_2_2Search for all Experiment with internal tag DegronSearch for all Experiment with internal tag RegulomeDB_2_1

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Library
11Homo sapiens HCT116 cell line genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, genetically modified (insertion) using CRISPR targeting H. sapiens CTCFENCBS026CTIENCGM628AIR, ENCGM628IQHENCLB556KTV
21Homo sapiens HCT116 cell line genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, genetically modified (insertion) using CRISPR targeting H. sapiens CTCFENCBS184IVKENCGM628AIR, ENCGM628IQHENCLB788ARZ

Files

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Replicates

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