Experiment summary for ENCSR448JAM
doi:10.17989/ENCSR448JAM
Summary
- Status
- released
- Assay
- shRNA knockdown followed by RNA-seq (shRNA RNA-seq)
- Target
- ZC3H8
- Biosample summary
- Homo sapiens K562 expressing RNAi targeting H. sapiens ZC3H8
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- RNA-seq on K562 cells treated with an shRNA knockdown against ZC3H8. (ZC3H8_BGKLV38)
- Nucleic acid type
- polyadenylated mRNA
- RNA integrity number
- 9.1
- Size range
- >200
- Extraction method
- Maxwell 16 LEV simpleRNA Cells Kit (Promega cat#: AS1270)
- Fragmentation methods
- chemical (Illumina TruSeq)
- Size selection method
- SPRI beads
- Strand specificity
- Strand-specific (reverse)
- Spike-ins datasets
- ENCSR358OMW
- Platform
- Illumina HiSeq 2500
- Controls
Attribution
ENCODE3 project
- Lab
- Brenton Graveley, UConn
- Award
- U54HG007005 (Brenton Graveley, UConn)
- Project
- ENCODE
- External resources
- References
- Aliases
- brenton-graveley:ZC3H8_BGKLV38
- Date submitted
- December 12, 2016
- Date released
- January 4, 2017
- Gene Silencing Series
- ENCSR637AJF
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Library |
|---|---|---|---|---|---|
| 1 | 1 | Homo sapiens K562 cell line expressing RNAi targeting H. sapiens ZC3H8 | ENCBS010AAK | ENCGM674XEG | ENCLB377LJT |
| 2 | 1 | Homo sapiens K562 cell line expressing RNAi targeting H. sapiens ZC3H8 | ENCBS106LEY | ENCGM674XEG | ENCLB745IAP |