Experiment summary for ENCSR439WAF

doi:10.17989/ENCSR439WAF

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
E4F1
Biosample summary
Homo sapiens GM12878
Biosample Type
cell line
Replication type
isogenic
Description
E4F1 ChIP-seq on human GM12878
Nucleic acid type
DNA
Size range
450-650
Controls

Attribution

ENCODE3 project
Lab
Michael Snyder, Stanford
Award
U54HG006996 (Michael Snyder, Stanford)
Project
ENCODE
External resources
Aliases
michael-snyder:ChIPss-484
Date submitted
April 29, 2016
Date released
January 26, 2018
Submitter comment
IMPORTANT: This experiment is currently under investigation for possible sample contamination, please use with caution if you must. We note that this ChIP-seq experiment was performed using an antibody for which we have provided a compliant primary characterization but no secondary characterization. A secondary characterization using IP-MS was attempted, but the experiment failed. There is no remaining antibody from this lot number and therefore additional secondary characterizations cannot be attempted. However, because the replicate ChIP-seq datasets passed the ENCODE IDR ChIP-seq data quality standards, we are releasing the data to the public.
Tags
Search for all Experiment with internal tag RegulomeDB_2_0Search for all Experiment with internal tag RegulomeDB_1_0Search for all Experiment with internal tag ENCYCLOPEDIAv5

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Antibody
Library
21GM12878 cell lineENCBS339VHOENCAB944PGRENCLB720WTE
11GM12878 cell lineENCBS276RPGENCAB944PGRENCLB587UUM