Experiment summary for ENCSR425NDU
doi:10.17989/ENCSR425NDU
Summary
- Status
- released
- Assay
- whole-genome shotgun bisulfite sequencing (WGBS)
- Biosample summary
- Mus musculus strain B6NCrl kidney tissue embryo (16.5 days)
- Biosample Type
- tissue
- Replication type
- isogenic
- Description
- Whole genome bisulfite-seq on embryonic 16.5 day mouse kidney
- Nucleic acid type
- DNA
- Size range
- 180-500
- Extraction method
- QIAGEN DNeasy Blood & Tissue Kit
- Fragmentation methods
- shearing (Covaris S2)
- Size selection method
- Sera-mag SpeedBeads
- Platform
- Illumina HiSeq 2500
Attribution
ENCODE3 project
- Lab
- Joe Ecker, Salk
- Award
- U54HG006997 (Bing Ren, UCSD)
- Project
- ENCODE
- External resources
- Aliases
- joe-ecker:E16_5_KD
- Date submitted
- June 5, 2014
- Date released
- December 17, 2014
- Organism Development Series
- ENCSR790SUM
- Reference Epigenome
- ENCSR709SFR
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 2 | Mus musculus strain B6NCrl mixed sex embryo (16.5 days) kidney tissue | ENCBS519MUD | ENCLB832HSL |
| 1 | 1 | Mus musculus strain B6NCrl mixed sex embryo (16.5 days) kidney tissue | ENCBS519MUD | ENCLB755XGL |
| 2 | 2 | Mus musculus strain B6NCrl mixed sex embryo (16.5 days) kidney tissue | ENCBS529OHA | ENCLB802MXC |
| 2 | 1 | Mus musculus strain B6NCrl mixed sex embryo (16.5 days) kidney tissue | ENCBS529OHA | ENCLB613EEA |