Experiment summary for ENCSR386BKJ

Summary

Status
released
Assay
ChIP-seq
Biosample summary
Drosophila melanogaster strain CG1602-GFP whole organism embryo (0-24 hours) genetically modified using site-specific recombination
Biosample Type
whole organisms
Replication type
isogenic
Description
ChIP-seq on transgenic flies expressing CG1602-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
Nucleic acid type
DNA
Size range
200-800
Fragmentation method
sonication (Bioruptor generic)
Size selection method
SPRI
Strand specificity
Non-strand-specific
Controls

Attribution

modERN project
Lab
Kevin White, UChicago
Award
U41HG007355 (Robert Waterston, UW)
Project
modERN
Aliases
kevin-white:CG1602-GFP
Date submitted
April 9, 2016
Date released
July 6, 2016
Submitter comment
ENCFF591DXL, ENCFF591DXL, ENCFF947HZM, ENCFF947HZM, ENCFF039NJG, ENCFF209FEC were revoked because a software bug accidentally truncated the file content. The submitters will provide replacement files.

Isogenic replicates

Isogenic replicateTechnical replicateSummaryBiosampleModificationsAntibodyLibrary
31strain CG1602-GFP mixed sex embryo (0-24 hours) whole organism genetically modified (insertion) using site-specific recombination targeting eGFP-CG1602ENCBS812JIXENCGM536TTNENCAB728YTOENCLB125BNR
21strain CG1602-GFP mixed sex embryo (0-24 hours) whole organism genetically modified (insertion) using site-specific recombination targeting eGFP-CG1602ENCBS311XPKENCGM536TTNENCAB728YTOENCLB535HFC
11strain CG1602-GFP mixed sex embryo (0-24 hours) whole organism genetically modified (insertion) using site-specific recombination targeting eGFP-CG1602ENCBS126GIHENCGM536TTNENCAB728YTOENCLB035SPF