Experiment summary for ENCSR380YQA
doi:10.17989/ENCSR380YQA
Summary
- Status
- released
- Assay
- HiC (in situ Hi-C)
- Biosample summary
- Homo sapiens mammary epithelial cell
- Biosample Type
- primary cell
- Replication type
- isogenic
- Description
- HMEC in situ Hi-C
- Nucleic acid type
- DNA
- Library starting quantity
- 22000000cells [2-3]5500000cells [1-1]5500000cells [2-1]22000000cells [2-2]22000000cells [2-4]22000000cells [2-5]
- Size range
- 300-500
- Fragmentation methods
- chemical (MboI restriction)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 2500
Attribution
ENCODE4 project
- Lab
- Erez Aiden, Baylor
- Award
- UM1HG009375 (Erez Aiden, Baylor)
- Project
- ENCODE
- External resources
- Aliases
- erez-aiden:russell-experiment-HMEC-in-situ
- Date submitted
- April 10, 2018
- Date released
- March 2, 2019
- Aggregate Series
- ENCSR630JSF
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 2 | 3 | Homo sapiens mammary epithelial primary cell | ENCBS453BOB | ENCLB461GRE |
| 1 | 1 | Homo sapiens mammary epithelial primary cell | ENCBS675CZS | ENCLB315QOX |
| 2 | 1 | Homo sapiens mammary epithelial primary cell | ENCBS453BOB | ENCLB097MPB |
| 2 | 2 | Homo sapiens mammary epithelial primary cell | ENCBS453BOB | ENCLB302YMD |
| 2 | 4 | Homo sapiens mammary epithelial primary cell | ENCBS453BOB | ENCLB462QLH |
| 2 | 5 | Homo sapiens mammary epithelial primary cell | ENCBS453BOB | ENCLB185SWX |