Experiment summary for ENCSR335SUD
doi:10.17989/ENCSR335SUD
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- ZNF436
- Biosample summary
- Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF436
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- eGFP-ZNF436 ChIP-seq on human K562
- Nucleic acid type
- DNA
- Size range
- 450-650 [1-1]450-650 [2-1]250-450 [1-2]250-450 [2-2]
- Fragmentation methods
- sonication (Bioruptor Pico)
- Platform
- Illumina HiSeq 4000
- Controls
Attribution
ENCODE4 project
- Lab
- Michael Snyder, Stanford
- Award
- UM1HG009442 (Michael Snyder, Stanford)
- Project
- ENCODE
- External resources
- Aliases
- michael-snyder:K562_eGFP-ZNF436_CRISPR_ChIP
- Date submitted
- January 13, 2018
- Date released
- August 3, 2020
- Annotation (gkmsvm-model)
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 1 | 1 | Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ZNF436 | ENCBS524VWM | ENCGM003VCE | ENCAB728YTO | ENCLB393OFJ |
| 2 | 1 | Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ZNF436 | ENCBS991EMK | ENCGM003VCE | ENCAB728YTO | ENCLB666GVC |
| 1 | 2 | Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ZNF436 | ENCBS524VWM | ENCGM003VCE | ENCAB728YTO | ENCLB931OXO |
| 2 | 2 | Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ZNF436 | ENCBS991EMK | ENCGM003VCE | ENCAB728YTO | ENCLB290XQO |