Experiment summary for ENCSR322UBD
doi:10.17989/ENCSR322UBD
Summary
- Status
- released
- Assay
- RNA-seq (total RNA-seq)
- Biosample summary
- Drosophila melanogaster strain yellow cinnabar brown speck whole organism prepupa 12 hours post synchronization at white prepupa stage
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- RNA-seq on ribo-depleted total RNA from whole organisms, white prepupa + 12 hour (prepupa)
- Nucleic acid type
- RNA
- Depleted in
- rRNA
- Size range
- >200
- Extraction method
- RNeasy
- Fragmentation methods
- chemical (generic)
- Size selection method
- SPRI beads
- Strand specificity
- Strand-specific (reverse)
- Spike-ins datasets
- ENCSR130DDI
- Platform
- Illumina HiSeq 2000
Attribution
modENCODE Project
- Lab
- Brenton Graveley, UConn
- Award
- U54HG006994 (Susan Celniker, LBNL)
- Project
- modENCODE
- References
- Aliases
- brenton-graveley:E-BS131-BS133
- Date submitted
- March 31, 2014
- Date released
- March 31, 2014
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 2 | 1 | Drosophila melanogaster strain yellow cinnabar brown speck mixed sex prepupa 12 hours post synchronization at white prepupa stage whole organism | ENCBS421WJA | ENCLB948IGD |
| 1 | 1 | Drosophila melanogaster strain yellow cinnabar brown speck mixed sex prepupa 12 hours post synchronization at white prepupa stage whole organism | ENCBS311ACM | ENCLB571ZQX |