Experiment summary for ENCSR316ASH
doi:10.17989/ENCSR316ASH
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- B0261.1
- Biosample summary
- Caenorhabditis elegans strain OP662 (unc-119(tm4063) III; wgIs662) whole organism young adult 64 hours post synchronization at L1 larva starved after bleaching stage genetically modified (insertion) using bombardment targeting C. elegans B0261.1
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq of transgenic worms expressing B0261.1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Fragmentation methods
- sonication (generic microtip)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 4000
- Controls
Attribution
modERN project
- Lab
- Valerie Reinke, Yale
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:B0261.1-OP662-yAd
- Date submitted
- October 4, 2016
- Date released
- October 10, 2016
- Submitter comment
- ENCFF655TNB, ENCFF053VRS, ENCFF015ZPY, ENCFF575RVZ were revoked because a software bug accidentally truncated the file content. The submitters will provide replacement files.
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 1 | 1 | Caenorhabditis elegans strain OP662 (unc-119(tm4063) III; wgIs662) mixed sex young adult 64 hours post synchronization at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans B0261.1 | ENCBS322CWZ | ENCGM135QNJ | ENCAB728YTO | ENCLB707XJC |
| 3 | 1 | Caenorhabditis elegans strain OP662 (unc-119(tm4063) III; wgIs662) mixed sex young adult 64 hours post synchronization at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans B0261.1 | ENCBS422IXH | ENCGM135QNJ | ENCAB728YTO | ENCLB113TZM |