Experiment summary for ENCSR274SLQ
doi:10.17989/ENCSR274SLQ
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- CHD2
- Biosample summary
- Homo sapiens SK-N-SH
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- CHD2 ChIP-seq on human SK-N-SH
- Nucleic acid type
- DNA
- Size range
- 150-350
- Platform
- Illumina Genome Analyzer IIx
- Controls
Attribution
ENCODE3 project
- Lab
- Michael Snyder, Stanford
- Award
- U54HG006996 (Michael Snyder, Stanford)
- Project
- ENCODE
- External resources
- Aliases
- michael-snyder:SK-N-SH-CHD2_ab68301_gaiix
- Date submitted
- July 4, 2014
- Date released
- January 26, 2018
- Annotation (gkmsvm-model)
- Annotation (BPNet-model)
- Submitter comment
- We note that this ChIP-seq experiment was performed using an antibody for which we have provided a compliant primary characterization but no secondary characterization. A secondary characterization using IP-MS was attempted, but the experiment failed. There is no remaining antibody from this lot number and therefore additional secondary characterizations cannot be attempted. However, because the replicate ChIP-seq datasets passed the ENCODE IDR ChIP-seq data quality standards, we are releasing the data to the public.
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Antibody | Library |
|---|---|---|---|---|---|
| 2 | 1 | Homo sapiens SK-N-SH cell line | ENCBS061YYT | ENCAB000AFG | ENCLB857MKV |
| 1 | 1 | Homo sapiens SK-N-SH cell line | ENCBS007RAH | ENCAB000AFG | ENCLB203HEW |