Experiment summary for ENCSR245LNF

doi:10.17989/ENCSR245LNF

Summary

Status
released
Assay
ATAC-seq
Biosample summary
Homo sapiens foreskin keratinocyte male newborn (2-4 days) treated with 1.2 mM calcium for 2.5 days
Biosample Type
primary cell
Replication type
anisogenic
Description
ATAC-seq on primary keratinocytes in day 3.0 of differentiation
Treatments
1.2 mM calcium (CHEBI:86158) for 2.5 days
Nucleic acid type
DNA
RNA integrity number
8.5 [2-5]9 [1-1]9 [1-2]9 [1-3]9 [1-4]9 [1-5]8.5 [2-1]8.5 [2-3]8.5 [2-2]8.5 [2-4]

Attribution

Genomics of Gene Regulation Project
Lab
Will Greenleaf, Stanford
Award
U01HG007919 (Michael Snyder, Stanford)
Project
GGR
External resources
Aliases
michael-snyder:ggr-skin-atacseq-day30
Date submitted
January 27, 2017
Date released
October 10, 2017
Treatment Time Series
ENCSR968JDE 
Annotation (gkmsvm-model)

Anisogenic replicates

Anisogenic replicate
Technical replicate
Summary
Biosample
Library
25Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 2.5 daysENCBS299ONKENCLB832JSY
11Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 2.5 daysENCBS079LRUENCLB628KNN
12Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 2.5 daysENCBS079LRUENCLB674LTT
13Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 2.5 daysENCBS079LRUENCLB131MEC
14Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 2.5 daysENCBS079LRUENCLB641DTG
15Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 2.5 daysENCBS079LRUENCLB270EEK
21Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 2.5 daysENCBS299ONKENCLB374IXL
23Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 2.5 daysENCBS299ONKENCLB077FPU
22Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 2.5 daysENCBS299ONKENCLB040XMV
24Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 2.5 daysENCBS299ONKENCLB365GKG