Experiment summary for ENCSR244ZVP
doi:10.17989/ENCSR244ZVP
Summary
- Status
- released
- Assay
- siRNA knockdown followed by RNA-seq (siRNA RNA-seq)
- Target
- ZFX
- Biosample summary
- Homo sapiens C4-2B expressing RNAi targeting H. sapiens ZFX
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- RNA-seq on CB-24 cells treated with siRNA targeting ZFX.
- Nucleic acid type
- RNA
- RNA integrity number
- 9.8 [3-1]9.8 [1-1]9.7 [2-1]
- Size range
- >200
- Strand specificity
- Strand-specific (reverse)
- Platform
- Illumina HiSeq 4000
- Controls
Attribution
ENCODE3 project
- Lab
- Michael Snyder, Stanford
- Award
- U54HG006996 (Michael Snyder, Stanford)
- Project
- ENCODE
- External resources
- Aliases
- peggy-farnham:E-C4-2B-ZFX
- Date submitted
- June 30, 2017
- Date released
- July 27, 2017
- Gene Silencing Series
- ENCSR237EJZ
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Library |
|---|---|---|---|---|---|
| 3 | 1 | Homo sapiens C4-2B cell line expressing RNAi targeting H. sapiens ZFX | ENCBS328CYG | ENCGM989SXT | ENCLB288ZVP |
| 1 | 1 | Homo sapiens C4-2B cell line expressing RNAi targeting H. sapiens ZFX | ENCBS159HRH | ENCGM989SXT | ENCLB471LFR |
| 2 | 1 | Homo sapiens C4-2B cell line expressing RNAi targeting H. sapiens ZFX | ENCBS108UKE | ENCGM989SXT | ENCLB069PAC |