1. Experiments
  2. ChIP-seq
  3. Homo sapiens
  4. K562

Experiment summary for ENCSR178DEG

doi:10.17989/ENCSR178DEG

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
NR2C1
Biosample summary
Homo sapiens K562 stably expressing NR2C1
Biosample Type
cell line
Replication type
isogenic
Description
eGFP-NR2C1 ChIP-seq on human K562
Nucleic acid type
DNA
Size range
450-650

Attribution

ENCODE3 project
Lab
Michael Snyder, Stanford
Award
U54HG006996 (Michael Snyder, Stanford)
Project
ENCODE
External resources
Aliases
michael-snyder:ChIPss-187
Date submitted
December 15, 2015
Date released
January 31, 2017
Annotation (gkmsvm-model)
Annotation (BPNet-model)
Submitter comment
Please note that the 'mixed platform' warning comes from the archived fastqs that were sequenced on the HiSeq2000 platform that if used, should be paired with the matching HiSeq2000 control ENCSR805ITZ. The pipeline was run on the fastqs and controls sequenced on the HiSeq4000 platform for consistency.
Tags
Search for all Experiment with internal tag RegulomeDB_1_0Search for all Experiment with internal tag RegulomeDB_2_0Search for all Experiment with internal tag ENCYCLOPEDIAv2Search for all Experiment with internal tag RegulomeDB_2_1Search for all Experiment with internal tag RegulomeDB_2_2

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Antibody
Library
21Homo sapiens K562 cell line stably expressing C-terminal eGFP-tagged NR2C1ENCBS706YBLENCGM969OUPENCAB728YTOENCLB152UJT
11Homo sapiens K562 cell line stably expressing C-terminal eGFP-tagged NR2C1ENCBS707WFIENCGM969OUPENCAB728YTOENCLB755WMD

Files

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Replicates

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