Experiment summary for ENCSR105NML
doi:10.17989/ENCSR105NML
Summary
- Status
- released
- Assay
- CRISPR genome editing followed by RNA-seq (CRISPR RNA-seq)
- Control type
- non-specific target
- Biosample summary
- Homo sapiens HepG2 genetically modified (deletion) using CRISPR
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- Control CRISPR gRNA against no target in HepG2 cells followed by RNA-seq. (NT_BGHcLV03)
- Nucleic acid type
- polyadenylated mRNA
- RNA integrity number
- 10
- Size range
- >200
- Extraction method
- Maxwell 16 LEV simpleRNA Cells Kit (Promega cat#: AS1270)
- Fragmentation methods
- chemical (Illumina TruSeq)
- Size selection method
- SPRI beads
- Strand specificity
- Strand-specific (reverse)
- Spike-ins datasets
- ENCSR358OMW
- Platform
- Illumina HiSeq 2500
Attribution
ENCODE3 project
- Lab
- Brenton Graveley, UConn
- Award
- U54HG007005 (Brenton Graveley, UConn)
- Project
- ENCODE
- External resources
- Aliases
- brenton-graveley:NT_BGHcLV03
- Date submitted
- March 9, 2016
- Date released
- March 17, 2016
- Gene Silencing Series
- ENCSR062UWG , ENCSR745IXO , ENCSR890HZD , ENCSR842FAV
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Library |
|---|---|---|---|---|---|
| 1 | 1 | Homo sapiens HepG2 cell line genetically modified (deletion) using CRISPR | ENCBS949DPY | ENCGM474NKS | ENCLB951JHO |
| 2 | 1 | Homo sapiens HepG2 cell line genetically modified (deletion) using CRISPR | ENCBS987KVB | ENCGM474NKS | ENCLB770SIK |