Experiment summary for ENCSR092LZV
doi:10.17989/ENCSR092LZV
Summary
- Status
- released
- Assay
- siRNA knockdown followed by RNA-seq (siRNA RNA-seq)
- Target
- CTCF+RAD21
- Biosample summary
- Homo sapiens K562 expressing RNAi targeting H. sapiens CTCF and expressing RNAi targeting H. sapiens RAD21
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- RNA-seq on K562 cells treated with siRNA targeting both CTCF and RAD21 together.
- Nucleic acid type
- RNA
- Size range
- >200
- Strand specificity
- unstranded
- Platform
- Illumina HiSeq 2000
- Controls
Attribution
ENCODE3 project
- Lab
- Michael Snyder, Stanford
- Award
- U54HG006996 (Michael Snyder, Stanford)
- Project
- ENCODE
- External resources
- Aliases
- sherman-weissman:E-K562-CTCF-RAD21
- Date submitted
- August 1, 2016
- Date released
- October 9, 2016
- Gene Silencing Series
- ENCSR835QLH
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Library |
|---|---|---|---|---|---|
| 1 | 1 | Homo sapiens K562 cell line expressing RNAi targeting H. sapiens RAD21 | ENCBS206QAM | ENCGM210ZIJ | ENCLB978VYE |
| 2 | 1 | Homo sapiens K562 cell line expressing RNAi targeting H. sapiens CTCF | ENCBS155DKW | ENCGM375MFR | ENCLB811UGH |