Experiment summary for ENCSR046XXF
doi:10.17989/ENCSR046XXF
Summary
- Status
- released
- Assay
- HiC (dilution Hi-C)
- Biosample summary
- Homo sapiens GM12878
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- GM12878 dilution Hi-C experiment
- Nucleic acid type
- DNA
- Library starting quantity
- 22000000cells [3-2]4000000cells [1-1]88000000cells [2-1]
- Size range
- 300-500
- Fragmentation methods
- chemical (HindIII restriction)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 2000
Attribution
ENCODE4 project
- Lab
- Erez Aiden, Baylor
- Award
- UM1HG009375 (Erez Aiden, Baylor)
- Project
- ENCODE
- External resources
- Aliases
- erez-aiden:experiment-gm12878-dilution
- Date submitted
- April 6, 2018
- Date released
- October 29, 2018
- Submitter comment
- Due to the sequencing depth of the dataset the following steps of the pipeline were excluded: arrowhead, hiccups, and delta. This dataset therefore does not have long range chromatin interactions, chromatin stripes, and topologically associated domains outputs.
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 3 | 2 | Homo sapiens GM12878 cell line | ENCBS160DJZ | ENCLB543ONT |
| 1 | 1 | Homo sapiens GM12878 cell line | ENCBS779LIK | ENCLB340BXQ |
| 2 | 1 | Homo sapiens GM12878 cell line | ENCBS772FMA | ENCLB490JUA |