Experiment summary for ENCSR040YBR
doi:10.17989/ENCSR040YBR
Summary
- Status
- released
- Assay
- RNA-seq (total RNA-seq)
- Biosample summary
- Homo sapiens K562 nuclear fraction
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- Initial nucleus fractions on K562 Long Total from Lecuyer
- Nucleic acid type
- RNA
- Depleted in
- rRNA
- Size range
- >200
- Extraction method
- Trizol
- Fragmentation methods
- chemical (Illumina TruSeq)
- Size selection method
- SPRI beads
- Strand specificity
- Strand-specific (reverse)
- Platform
- Illumina HiSeq 2000
Attribution
ENCODE3 project
- Lab
- Eric Lécuyer, IRCM
- Award
- U54HG007005 (Brenton Graveley, UConn)
- Project
- ENCODE
- External resources
- Aliases
- eric-lecuyer:K562-init-Nucleus
- Date submitted
- February 21, 2015
- Date released
- April 21, 2016
- Annotation (physical modeling)
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 2 | 1 | Homo sapiens K562 cell line nuclear fraction | ENCBS371NDR | ENCLB645CDM |
| 1 | 1 | Homo sapiens K562 cell line nuclear fraction | ENCBS175LZM | ENCLB873LMQ |