Experiment summary for ENCSR027ICI
doi:10.17989/ENCSR027ICI
Summary
- Status
- released
- Assay
- whole-genome shotgun bisulfite sequencing (WGBS)
- Biosample summary
- Mus musculus strain B6NCrl lung tissue embryo (15.5 days)
- Biosample Type
- tissue
- Replication type
- isogenic
- Description
- Whole genome bisulfite-seq on embryonic 15.5 day mouse lung
- Nucleic acid type
- DNA
- Size range
- 180-500
- Lysis method
- QIAGEN DNeasy Blood & Tissue Kit
- Fragmentation methods
- shearing (Covaris S2)
- Size selection method
- Sera-mag SpeedBeads
- Platform
- Illumina HiSeq 2500
Attribution
ENCODE3 project
- Lab
- Joe Ecker, Salk
- Award
- U54HG006997 (Bing Ren, UCSD)
- Project
- ENCODE
- External resources
- Aliases
- joe-ecker:E15_5_LG
- Date submitted
- April 28, 2015
- Date released
- June 23, 2015
- Organism Development Series
- ENCSR296HYS
- Reference Epigenome
- ENCSR881OKK
- Submitter comment
- Fastq files ENCFF385WSO, ENCFF492ZEJ, ENCFF465KVX, and ENCFF309RMH contain reads of mixed lengths. Read lengths followed by respective number of reads: ENCFF385WSO (117, 163101276), (132, 197006464), (145, 189011955); ENCFF492ZEJ (117, 182990688), (132, 197297342), (145, 182262873); ENCFF465KVX (117, 185995440), (132, 195371090); ENCFF309RMH (117, 194941421), (132, 195852141).
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 2 | Mus musculus strain B6NCrl mixed sex embryo (15.5 days) lung tissue | ENCBS467HSM | ENCLB656EHL |
| 2 | 1 | Mus musculus strain B6NCrl mixed sex embryo (15.5 days) lung tissue | ENCBS217WPC | ENCLB035AXR |
| 1 | 1 | Mus musculus strain B6NCrl mixed sex embryo (15.5 days) lung tissue | ENCBS467HSM | ENCLB729DSZ |
| 2 | 2 | Mus musculus strain B6NCrl mixed sex embryo (15.5 days) lung tissue | ENCBS217WPC | ENCLB340WGY |