Experiment summary for ENCSR004RJS
doi:10.17989/ENCSR004RJS
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- CG9876
- Biosample summary
- Drosophila melanogaster strain CG9876-GFP whole organism embryo (0-24 hours) genetically modified (insertion) using site-specific recombination targeting D. melanogaster CG9876
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq on transgenic flies expressing CG9876-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Size range
- 200-800
- Fragmentation methods
- sonication (Bioruptor generic)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 2000
- Controls
Attribution
modERN project
- Lab
- Kevin White, UChicago
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:CG9876-GFP
- Date submitted
- July 24, 2015
- Date released
- July 6, 2016
- Submitter comment
- ENCFF754LAS, ENCFF084OPE, ENCFF208NVE, ENCFF163PVY were revoked because a software bug accidentally truncated the file content. The submitters will provide replacement files.
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 2 | 1 | Drosophila melanogaster strain CG9876-GFP mixed sex embryo (0-24 hours) whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster CG9876 | ENCBS257JQU | ENCGM662MVJ | ENCAB728YTO | ENCLB211URW |
| 1 | 1 | Drosophila melanogaster strain CG9876-GFP mixed sex embryo (0-24 hours) whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster CG9876 | ENCBS717FRH | ENCGM662MVJ | ENCAB728YTO | ENCLB245AOF |