Experiment summary for ENCSR002FCO
doi:10.17989/ENCSR002FCO
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- ceh-36
- Biosample summary
- Caenorhabditis elegans strain OP620 (unc-119(tm4063) III; wgIs620) whole organism early embryo 2 hours post synchronization using egg bleaching genetically modified (insertion) using bombardment targeting C. elegans ceh-36
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq of transgenic worms expressing CEH-36-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Fragmentation methods
- sonication (generic microtip)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 4000
- Controls
Attribution
modERN project
- Lab
- Valerie Reinke, Yale
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:CEH-36-OP620-EE
- Date submitted
- October 4, 2016
- Date released
- October 11, 2016
- Submitter comment
- ENCFF156SWN, ENCFF856WPE, ENCFF744QGI, ENCFF893NZB were revoked because a software bug accidentally truncated the file content. The submitters will provide replacement files.
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
---|---|---|---|---|---|---|
1 | 1 | Caenorhabditis elegans strain OP620 (unc-119(tm4063) III; wgIs620) mixed sex early embryo 2 hours post synchronization using egg bleaching whole organism genetically modified (insertion) using bombardment targeting C. elegans ceh-36 | ENCBS626HPD | ENCGM623IBY | ENCAB728YTO | ENCLB824ADD |
2 | 1 | Caenorhabditis elegans strain OP620 (unc-119(tm4063) III; wgIs620) mixed sex early embryo 2 hours post synchronization using egg bleaching whole organism genetically modified (insertion) using bombardment targeting C. elegans ceh-36 | ENCBS447GRK | ENCGM623IBY | ENCAB728YTO | ENCLB935ENA |