Experiment summary for ENCSR000OXO
doi:10.17989/ENCSR000OXO
Summary
- Status
- archived
- Assay
- single-cell RNA sequencing assay (scRNA-seq)
- Control type
- control
- Biosample summary
- Mus musculus strain B6NCrl forebrain tissue embryo (11.5 days)
- Biosample Type
- tissue
- Replication type
- isogenic
- Description
- Total RNA-seq on embryonic 11.5 day (e11.5) mouse forebrain
- Nucleic acid type
- RNA
- Library starting quantity
- 1cell-equivalent
- Size range
- >200
- Extraction method
- Ambion mirVana
- Fragmentation methods
- chemical (Nextera tagmentation)
- Size selection method
- SPRI beads
- Strand specificity
- unstranded
- Spike-ins datasets
- ENCSR013YHQ, ENCSR133ALU
- Platform
- Illumina HiSeq 2000
Attribution
ENCODE3 project
- Lab
- Barbara Wold, Caltech
- Award
- U54HG006998 (Richard Myers, HAIB)
- Project
- ENCODE
- External resources
- Aliases
- barbara-wold:mouse-e11-5-forebrain
- Date submitted
- July 22, 2014
- Date released
- September 29, 2014
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 1 | Mus musculus strain B6NCrl mixed sex embryo (11.5 days) forebrain tissue | ENCBS745VOM | ENCLB917PKP |
| 2 | 1 | Mus musculus strain B6NCrl mixed sex embryo (11.5 days) forebrain tissue | ENCBS720JOH | ENCLB026BHP |