1. Experiments
  2. DNase-seq
  3. Homo sapiens
  4. MCF-7

Experiment summary for ENCSR000EKX

doi:10.17989/ENCSR000EKX

Summary

Status
released
Assay
DNase-seq
Biosample summary
Homo sapiens MCF-7 expressing RNAi targeting H. sapiens CTCF
Biosample Type
cell line
Replication type
unreplicated
Description
DNase-seq on human MCF-7 treated with CTCF shRNA knockdown
Nucleic acid type
DNA
Fragmentation methods
see document

Attribution

ENCODE2 project
Lab
Gregory Crawford, Duke
Award
U54HG004563 (Gregory Crawford, Duke)
Project
ENCODE
Date submitted
January 11, 2011
Date released
August 28, 2012
Annotation (gkmsvm-model)
Tags
Search for all Experiment with internal tag RegulomeDB_1_0Search for all Experiment with internal tag RegulomeDB_2_0Search for all Experiment with internal tag ENCYCLOPEDIAv2Search for all Experiment with internal tag RegulomeDB_2_1Search for all Experiment with internal tag RegulomeDB_2_2

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Library
13Homo sapiens MCF-7 cell line expressing RNAi targeting H. sapiens CTCFENCBS094ENCENCGM116LDXENCLB073NVP
11Homo sapiens MCF-7 cell line expressing RNAi targeting H. sapiens CTCFENCBS094ENCENCGM116LDXENCLB286HQK
12Homo sapiens MCF-7 cell line expressing RNAi targeting H. sapiens CTCFENCBS094ENCENCGM116LDXENCLB902VWC

Files

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