Experiment summary for ENCSR000EIO
doi:10.17989/ENCSR000EIO
Summary
- Status
- released
- Assay
- DNase-seq
- Biosample summary
- Homo sapiens Ishikawa treated with 10 nM 17β-estradiol for 30 minutes
- Biosample Type
- cell line
- Replication type
- unreplicated
- Description
- DNase-seq on human ECC-1 treated with estradiol at 10nM for 30 minutes. Note: This experiment previously referred to its biosample as ECC-1, however it has been found that all currently available ECC-1 are actually Ishikawa cells (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3432677/).
- Treatments
- 10 nM 17β-estradiol (CHEBI:16469) for 30 minutes
- Nucleic acid type
- DNA
- Fragmentation methods
- see document
- Platform
- Illumina Genome Analyzer
Attribution
ENCODE2 project
- Lab
- Gregory Crawford, Duke
- Award
- U54HG004563 (Gregory Crawford, Duke)
- Project
- ENCODE
- External resources
- References
- Date submitted
- January 11, 2011
- Date released
- March 28, 2012
- Annotation (gkmsvm-model)
- Submitter comment
- The data quality is too poor for processing.
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 1 | Homo sapiens Ishikawa cell line treated with 10 nM 17β-estradiol for 30 minutes | ENCBS767JJY | ENCLB804BVN |
| 1 | 2 | Homo sapiens Ishikawa cell line treated with 10 nM 17β-estradiol for 30 minutes | ENCBS767JJY | ENCLB881NCQ |