Experiment summary for ENCSR000CLW
doi:10.17989/ENCSR000CLW
Summary
- Status
- released
- Assay
- polyA plus RNA-seq
- Biosample summary
- Mus musculus strain NIH3T3 NIH3T3
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- RNA-seq on mouse NIH-3T3 cell line
- Nucleic acid type
- polyadenylated mRNA
- Size range
- >200
- Fragmentation methods
- see document
- Strand specificity
- Strand-specific (forward)
- Spike-ins datasets
- ENCSR156CIL
Attribution
ENCODE Mouse Project
- Lab
- John Stamatoyannopoulos, UW
- Award
- RC2HG005654 (John Stamatoyannopoulos, UW)
- Project
- ENCODE
- External resources
- Date submitted
- March 21, 2012
- Date released
- July 10, 2012
- Submitter comment
- The preferred default files of this dataset were selected based on the read counts of the fastq files because no uniform processing pipeline is available for datasets sequenced using the Applied Biosystems SOLiD platform.
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
---|---|---|---|---|
2 | 1 | Mus musculus strain NIH3T3 NIH3T3 cell line | ENCBS117ENC | ENCLB793EQG |
1 | 1 | Mus musculus strain NIH3T3 NIH3T3 cell line | ENCBS117ENC | ENCLB184BOM |