Experiment summary for ENCSR000BZZ

Summary

Status
released
Assay
ChIA-PET
Target
ESR1
Biosample summary
Homo sapiens MCF-7
Biosample Type
cell line
Replication type
isogenic
Description
ESR1 ChIA-PET on human MCF-7
Nucleic acid type
DNA
Lysis method
see document
Extraction method
see document
Fragmentation method
see document
Size selection method
see document
Strand specificity
Non-strand-specific

Attribution

ENCODE2 project
Lab
Yijun Ruan, JAX
Award
R01HG004456 (Yijun Ruan, JAX)
Project
ENCODE
Date submitted
September 24, 2011
Date released
May 24, 2012
Submitter comment
Fastq files ENCFF000KZA, ENCFF000KZB, ENCFF000KZI, and ENCFF000KZM contain reads of mixed lengths. Read lengths followed by respective number of reads: ENCFF000KZA: (20, 19306946), (37, 6863311); ENCFF000KZB: (20, 13603162), (37, 13866893); ENCFF000KZI: (20, 19306946), (37, 6863311), ENCFF000KZM: (20, 13603162), (37, 13866893).

Isogenic replicates

Isogenic replicateTechnical replicateSummaryBiosampleAntibodyLibrary
21MCF-7 cell lineENCBS236AAAENCAB000AGDENCLB559JAK
11MCF-7 cell lineENCBS236AAAENCAB000AGDENCLB559JAL
31MCF-7 cell lineENCBS236AAAENCAB000AGDENCLB559JAO