Experiment summary for ENCSR000ATW

Replaces ENCSR454GCP

  • Status: released

Summary

Assay
ChIP-seq
Target
CBX8
Biosample summary
Homo sapiens K562
Biosample Type
immortalized cell line
Replication type
isogenic
Description
ChIP-seq on human K562 CBX8
Nucleic acid type
DNA
Library starting quantity
40.2ng [2-1]
Size range
200-600 [1-1]200-600 [2-1]
Lysis method
see document [3-1]see document [1-1]
Extraction method
see document [3-1]see document [1-1]
Fragmentation method
see document [3-1]sonication (generic) [1-1]sonication (generic) [2-1]
Size selection method
see document [3-1]see document [1-1]
Strand specificity
Non-strand-specific
Platform
HiSeq 2000
Controls

Attribution

ENCODE2 project
Lab
Bradley Bernstein, Broad
Award
U54HG004570 (Bradley Bernstein, Broad)
Project
ENCODE
Aliases
bradley-bernstein:Project Element 43
Date released
August 6, 2012
Submitter comment
As of February 16, 2017, new mapping and peak calling is required due to duplicated files.
Tags
ENCYCLOPEDIAv4 tag

Isogenic replicates

Isogenic replicateTechnical replicateSummaryBiosampleAntibodyLibrary
31K562 immortalized cell lineENCBS639AAAENCAB000AEXENCLB695AMQ
11K562 immortalized cell lineENCBS674MPNENCAB000AEXENCLB514VNJ
21K562 immortalized cell lineENCBS979ZKWENCAB000AEXENCLB423PJC