1. Experiments
  2. microRNA-seq
  3. Homo sapiens
  4. GM12878

Experiment summary for ENCSR000AEK

doi:10.17989/ENCSR000AEK

Superseded by ENCSR770HBF

Summary

Status
archived
Assay
microRNA-seq
Biosample summary
Homo sapiens GM12878
Biosample Type
cell line
Replication type
isogenic
Description
RNA Evaluation GM12878 micro RNA-seq from Mortazavi
Nucleic acid type
miRNA
Size range
<30
Extraction method
Ambion mirVana
Fragmentation methods
none
Size selection method
gel
Strand specificity
Strand-specific (reverse)

Attribution

ENCODE3 project
Lab
Ali Mortazavi, UCI
Award
U54HG006998 (Richard Myers, HAIB)
Project
ENCODE
External resources
References
Aliases
ali-mortazavi:human-GM12878-mirna-seq
Date submitted
June 30, 2013
Date released
November 20, 2014
Submitter comment
This experiment has different adapters from all of the other ENCODE3 microRNA-seq data. This experiment was redone using updated methods. See ENCSR885JRA for the updated dataset.

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Library
11Homo sapiens GM12878 cell lineENCBS089RNAENCLB051ZZZ
21Homo sapiens GM12878 cell lineENCBS090RNAENCLB052ZZZ

Files

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File format
Output type
Replicates

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