1. Experiments
  2. polyA plus RNA-seq
  3. Homo sapiens
  4. GM12878

Experiment summary for ENCSR000AEG

doi:10.17989/ENCSR000AEG

Summary

Status
released
Assay
polyA plus RNA-seq
Biosample summary
Homo sapiens GM12878
Biosample Type
cell line
Replication type
isogenic
Description
PolyA RNA-Seq from oligo-dT primed Total RNA on the GM12878 cell line
Nucleic acid type
polyadenylated mRNA
Size range
>200
Extraction method
Ambion mirVana
Fragmentation methods
chemical (Nextera tagmentation)
Size selection method
SPRI beads
Strand specificity
unstranded
Spike-ins datasets
ENCSR013YHQ, ENCSR156CIL

Attribution

ENCODE3 project
Lab
Barbara Wold, Caltech
Award
U54HG006998 (Richard Myers, HAIB)
Project
ENCODE
External resources
Aliases
encode:evaluation_set_GM12878_polyA_Wold_01
Date submitted
July 22, 2013
Date released
July 7, 2014
Tags
Search for all Experiment with internal tag ENCYCLOPEDIAv1Search for all Experiment with internal tag ENCYCLOPEDIAv2

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Library
21Homo sapiens GM12878 cell lineENCBS090RNAENCLB044ZZZ
11Homo sapiens GM12878 cell lineENCBS089RNAENCLB043ZZZ

Files

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Output type
Replicates

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