ENCORE Matrix

ENCORE logo
The ENCORE project aims to study protein-RNA interactions by creating a map of RNA binding proteins (RBPs) encoded in the human genome and identifying the RNA elements that the RBPs bind to.
Assay
Target
shRNA RNA-seq
CRISPR RNA-seq
eCLIP
RNA Bind-n-Seq
TF ChIP-seq
iCLIP
K562HepG2
K562HepG2
K562HepG2
 
K562HepG2
K562
TAF15 
TAF15, shRNA RNA-seq, K562
 
TAF15, shRNA RNA-seq, HepG2
  
TAF15, eCLIP, K562
 
TAF15, eCLIP, HepG2
  
TAF15, RNA Bind-n-Seq, cell-free sample
  
TAF15, TF ChIP-seq, K562
 
TAF15, TF ChIP-seq, HepG2
  
FUS 
FUS, shRNA RNA-seq, K562
 
FUS, shRNA RNA-seq, HepG2
  
FUS, eCLIP, K562
 
FUS, eCLIP, HepG2
  
FUS, RNA Bind-n-Seq, cell-free sample
  
FUS, TF ChIP-seq, K562
 
FUS, TF ChIP-seq, HepG2
  
HNRNPK 
HNRNPK, shRNA RNA-seq, K562
 
HNRNPK, shRNA RNA-seq, HepG2
  
HNRNPK, eCLIP, K562
 
HNRNPK, eCLIP, HepG2
  
HNRNPK, RNA Bind-n-Seq, cell-free sample
  
HNRNPK, TF ChIP-seq, K562
 
HNRNPK, TF ChIP-seq, HepG2
  
HNRNPL 
HNRNPL, shRNA RNA-seq, K562
 
HNRNPL, shRNA RNA-seq, HepG2
  
HNRNPL, eCLIP, K562
 
HNRNPL, eCLIP, HepG2
  
HNRNPL, RNA Bind-n-Seq, cell-free sample
  
HNRNPL, TF ChIP-seq, K562
 
HNRNPL, TF ChIP-seq, HepG2
  
PCBP1 
PCBP1, shRNA RNA-seq, K562
 
PCBP1, shRNA RNA-seq, HepG2
  
PCBP1, eCLIP, K562
 
PCBP1, eCLIP, HepG2
  
PCBP1, RNA Bind-n-Seq, cell-free sample
  
PCBP1, TF ChIP-seq, K562
 
PCBP1, TF ChIP-seq, HepG2
  
PTBP1 
PTBP1, shRNA RNA-seq, K562
 
PTBP1, shRNA RNA-seq, HepG2
  
PTBP1, eCLIP, K562
 
PTBP1, eCLIP, HepG2
   
PTBP1, TF ChIP-seq, K562
 
PTBP1, TF ChIP-seq, HepG2
  
RBFOX2 
RBFOX2, shRNA RNA-seq, K562
 
RBFOX2, shRNA RNA-seq, HepG2
  
RBFOX2, eCLIP, K562
 
RBFOX2, eCLIP, HepG2
  
RBFOX2, RNA Bind-n-Seq, cell-free sample
  
RBFOX2, TF ChIP-seq, K562
 
RBFOX2, TF ChIP-seq, HepG2
  
RBM22 
RBM22, shRNA RNA-seq, K562
 
RBM22, shRNA RNA-seq, HepG2
  
RBM22, eCLIP, K562
 
RBM22, eCLIP, HepG2
  
RBM22, RNA Bind-n-Seq, cell-free sample
  
RBM22, TF ChIP-seq, K562
 
RBM22, TF ChIP-seq, HepG2
  
SRSF9 
SRSF9, shRNA RNA-seq, HepG2
 
SRSF9, CRISPR RNA-seq, K562
 
SRSF9, CRISPR RNA-seq, HepG2
  
SRSF9, eCLIP, HepG2
  
SRSF9, RNA Bind-n-Seq, cell-free sample
  
SRSF9, TF ChIP-seq, K562
 
SRSF9, TF ChIP-seq, HepG2
  
TARDBP 
TARDBP, shRNA RNA-seq, K562
 
TARDBP, shRNA RNA-seq, HepG2
  
TARDBP, eCLIP, K562
  
TARDBP, RNA Bind-n-Seq, cell-free sample
  
TARDBP, TF ChIP-seq, K562
 
TARDBP, TF ChIP-seq, HepG2
  
XRCC6 
XRCC6, shRNA RNA-seq, K562
 
XRCC6, shRNA RNA-seq, HepG2
 
XRCC6, CRISPR RNA-seq, K562
 
XRCC6, CRISPR RNA-seq, HepG2
  
XRCC6, eCLIP, K562
 
XRCC6, eCLIP, HepG2
  
XRCC6, RNA Bind-n-Seq, cell-free sample
   
GTF2F1 
GTF2F1, shRNA RNA-seq, K562
 
GTF2F1, shRNA RNA-seq, HepG2
  
GTF2F1, eCLIP, K562
 
GTF2F1, eCLIP, HepG2
   
GTF2F1, TF ChIP-seq, K562
 
GTF2F1, TF ChIP-seq, HepG2
  
HNRNPC 
HNRNPC, shRNA RNA-seq, K562
 
HNRNPC, shRNA RNA-seq, HepG2
  
HNRNPC, eCLIP, K562
 
HNRNPC, eCLIP, HepG2
  
HNRNPC, RNA Bind-n-Seq, cell-free sample
   
HNRNPUL1 
HNRNPUL1, shRNA RNA-seq, K562
 
HNRNPUL1, shRNA RNA-seq, HepG2
  
HNRNPUL1, eCLIP, K562
 
HNRNPUL1, eCLIP, HepG2
   
HNRNPUL1, TF ChIP-seq, K562
 
HNRNPUL1, TF ChIP-seq, HepG2
  
IGF2BP3 
IGF2BP3, shRNA RNA-seq, K562
 
IGF2BP3, shRNA RNA-seq, HepG2
  
IGF2BP3, eCLIP, HepG2
  
IGF2BP3, RNA Bind-n-Seq, cell-free sample
   
IGF2BP3, iCLIP, K562
 
PCBP2 
PCBP2, shRNA RNA-seq, K562
 
PCBP2, shRNA RNA-seq, HepG2
  
PCBP2, eCLIP, HepG2
  
PCBP2, RNA Bind-n-Seq, cell-free sample
  
PCBP2, TF ChIP-seq, K562
 
PCBP2, TF ChIP-seq, HepG2
  
PRPF4 
PRPF4, shRNA RNA-seq, K562
 
PRPF4, shRNA RNA-seq, HepG2
  
PRPF4, eCLIP, HepG2
   
PRPF4, TF ChIP-seq, K562
 
PRPF4, TF ChIP-seq, HepG2
  
SFPQ 
SFPQ, shRNA RNA-seq, K562
 
SFPQ, shRNA RNA-seq, HepG2
  
SFPQ, eCLIP, HepG2
  
SFPQ, RNA Bind-n-Seq, cell-free sample
  
SFPQ, TF ChIP-seq, K562
 
SFPQ, TF ChIP-seq, HepG2
  
SRSF1 
SRSF1, shRNA RNA-seq, K562
 
SRSF1, shRNA RNA-seq, HepG2
  
SRSF1, eCLIP, K562
 
SRSF1, eCLIP, HepG2
   
SRSF1, TF ChIP-seq, K562
 
SRSF1, TF ChIP-seq, HepG2
  
SRSF4 
SRSF4, CRISPR RNA-seq, K562
 
SRSF4, CRISPR RNA-seq, HepG2
   
SRSF4, RNA Bind-n-Seq, cell-free sample
  
SRSF4, TF ChIP-seq, HepG2
  
TRA2A 
TRA2A, shRNA RNA-seq, K562
 
TRA2A, shRNA RNA-seq, HepG2
 
TRA2A, CRISPR RNA-seq, K562
  
TRA2A, eCLIP, K562
 
TRA2A, eCLIP, HepG2
  
TRA2A, RNA Bind-n-Seq, cell-free sample
   
U2AF1 
U2AF1, shRNA RNA-seq, K562
 
U2AF1, shRNA RNA-seq, HepG2
  
U2AF1, eCLIP, K562
 
U2AF1, eCLIP, HepG2
   
U2AF1, TF ChIP-seq, K562
 
U2AF1, TF ChIP-seq, HepG2
  
U2AF2 
U2AF2, shRNA RNA-seq, K562
 
U2AF2, shRNA RNA-seq, HepG2
  
U2AF2, eCLIP, K562
 
U2AF2, eCLIP, HepG2
   
U2AF2, TF ChIP-seq, K562
 
U2AF2, TF ChIP-seq, HepG2
  
AGGF1 
AGGF1, shRNA RNA-seq, K562
 
AGGF1, CRISPR RNA-seq, HepG2
  
AGGF1, eCLIP, K562
 
AGGF1, eCLIP, HepG2
    
DDX6 
DDX6, shRNA RNA-seq, K562
 
DDX6, shRNA RNA-seq, HepG2
 
DDX6, CRISPR RNA-seq, K562
  
DDX6, eCLIP, K562
 
DDX6, eCLIP, HepG2
    
DGCR8 
DGCR8, CRISPR RNA-seq, K562
  
DGCR8, eCLIP, K562
 
DGCR8, eCLIP, HepG2
    
FUBP3 
FUBP3, shRNA RNA-seq, K562
 
FUBP3, shRNA RNA-seq, HepG2
 
FUBP3, CRISPR RNA-seq, K562
  
FUBP3, eCLIP, HepG2
  
FUBP3, RNA Bind-n-Seq, cell-free sample
   
FXR2 
FXR2, shRNA RNA-seq, K562
 
FXR2, CRISPR RNA-seq, K562
 
FXR2, CRISPR RNA-seq, HepG2
  
FXR2, eCLIP, K562
 
FXR2, eCLIP, HepG2
    
HNRNPU 
HNRNPU, shRNA RNA-seq, K562
 
HNRNPU, shRNA RNA-seq, HepG2
  
HNRNPU, eCLIP, K562
 
HNRNPU, eCLIP, HepG2
    
IGF2BP1 
IGF2BP1, CRISPR RNA-seq, K562
 
IGF2BP1, CRISPR RNA-seq, HepG2
  
IGF2BP1, eCLIP, K562
 
IGF2BP1, eCLIP, HepG2
  
IGF2BP1, RNA Bind-n-Seq, cell-free sample
   
KHSRP 
KHSRP, shRNA RNA-seq, K562
 
KHSRP, shRNA RNA-seq, HepG2
  
KHSRP, eCLIP, K562
 
KHSRP, eCLIP, HepG2
  
KHSRP, RNA Bind-n-Seq, cell-free sample
   
LIN28B 
LIN28B, shRNA RNA-seq, K562
 
LIN28B, shRNA RNA-seq, HepG2
  
LIN28B, eCLIP, K562
 
LIN28B, eCLIP, HepG2
  
LIN28B, RNA Bind-n-Seq, cell-free sample
   
NONO 
NONO, shRNA RNA-seq, K562
 
NONO, shRNA RNA-seq, HepG2
  
NONO, eCLIP, K562
   
NONO, TF ChIP-seq, K562
 
NONO, TF ChIP-seq, HepG2
  
POLR2G 
POLR2G, shRNA RNA-seq, K562
 
POLR2G, CRISPR RNA-seq, K562
  
POLR2G, eCLIP, HepG2
   
POLR2G, TF ChIP-seq, K562
 
POLR2G, TF ChIP-seq, HepG2
  
PRPF8 
PRPF8, shRNA RNA-seq, K562
 
PRPF8, shRNA RNA-seq, HepG2
 
PRPF8, CRISPR RNA-seq, K562
  
PRPF8, eCLIP, K562
 
PRPF8, eCLIP, HepG2
    
RBM15 
RBM15, shRNA RNA-seq, K562
 
RBM15, shRNA RNA-seq, HepG2
  
RBM15, eCLIP, K562
 
RBM15, eCLIP, HepG2
   
RBM15, TF ChIP-seq, K562
  
RBM25 
RBM25, shRNA RNA-seq, K562
 
RBM25, shRNA RNA-seq, HepG2
 
RBM25, CRISPR RNA-seq, K562
   
RBM25, RNA Bind-n-Seq, cell-free sample
  
RBM25, TF ChIP-seq, K562
  
SAFB 
SAFB, CRISPR RNA-seq, K562
 
SAFB, CRISPR RNA-seq, HepG2
  
SAFB, eCLIP, K562
 
SAFB, eCLIP, HepG2
   
SAFB, TF ChIP-seq, K562
  
SAFB2 
SAFB2, shRNA RNA-seq, K562
 
SAFB2, shRNA RNA-seq, HepG2
  
SAFB2, eCLIP, K562
  
SAFB2, RNA Bind-n-Seq, cell-free sample
  
SAFB2, TF ChIP-seq, K562
  
SRSF7 
SRSF7, CRISPR RNA-seq, K562
 
SRSF7, CRISPR RNA-seq, HepG2
  
SRSF7, eCLIP, K562
 
SRSF7, eCLIP, HepG2
   
SRSF7, TF ChIP-seq, K562
  
TIA1 
TIA1, shRNA RNA-seq, K562
 
TIA1, shRNA RNA-seq, HepG2
  
TIA1, eCLIP, K562
 
TIA1, eCLIP, HepG2
  
TIA1, RNA Bind-n-Seq, cell-free sample
   
TROVE2 
TROVE2, shRNA RNA-seq, K562
 
TROVE2, shRNA RNA-seq, HepG2
  
TROVE2, eCLIP, K562
 
TROVE2, eCLIP, HepG2
  
TROVE2, RNA Bind-n-Seq, cell-free sample
   
XRCC5 
XRCC5, shRNA RNA-seq, K562
 
XRCC5, shRNA RNA-seq, HepG2
 
XRCC5, CRISPR RNA-seq, K562
    
XRCC5, TF ChIP-seq, K562
 
XRCC5, TF ChIP-seq, HepG2
  
AGO1 
AGO1, shRNA RNA-seq, K562
 
AGO1, shRNA RNA-seq, HepG2
    
AGO1, TF ChIP-seq, K562
 
AGO1, TF ChIP-seq, HepG2
  
AKAP1 
AKAP1, shRNA RNA-seq, K562
 
AKAP1, shRNA RNA-seq, HepG2
  
AKAP1, eCLIP, K562
 
AKAP1, eCLIP, HepG2
    
AKAP8L 
AKAP8L, shRNA RNA-seq, K562
 
AKAP8L, shRNA RNA-seq, HepG2
  
AKAP8L, eCLIP, K562
  
AKAP8L, RNA Bind-n-Seq, cell-free sample
   
APOBEC3C 
APOBEC3C, shRNA RNA-seq, K562
 
APOBEC3C, shRNA RNA-seq, HepG2
  
APOBEC3C, eCLIP, K562
  
APOBEC3C, RNA Bind-n-Seq, cell-free sample
   
AQR 
AQR, shRNA RNA-seq, K562
 
AQR, shRNA RNA-seq, HepG2
  
AQR, eCLIP, K562
 
AQR, eCLIP, HepG2
    
BUD13 
BUD13, shRNA RNA-seq, K562
 
BUD13, shRNA RNA-seq, HepG2
  
BUD13, eCLIP, K562
 
BUD13, eCLIP, HepG2
    
CCAR2 
CCAR2, shRNA RNA-seq, K562
 
CCAR2, shRNA RNA-seq, HepG2
    
CCAR2, TF ChIP-seq, K562
 
CCAR2, TF ChIP-seq, HepG2
  
CELF1 
CELF1, shRNA RNA-seq, K562
 
CELF1, shRNA RNA-seq, HepG2
   
CELF1, RNA Bind-n-Seq, cell-free sample
   
CIRBP 
CIRBP, shRNA RNA-seq, K562
 
CIRBP, shRNA RNA-seq, HepG2
 
CIRBP, CRISPR RNA-seq, K562
 
CIRBP, CRISPR RNA-seq, HepG2
     
CSTF2T 
CSTF2T, shRNA RNA-seq, K562
 
CSTF2T, shRNA RNA-seq, HepG2
  
CSTF2T, eCLIP, K562
 
CSTF2T, eCLIP, HepG2
    
DDX3X 
DDX3X, shRNA RNA-seq, K562
 
DDX3X, shRNA RNA-seq, HepG2
  
DDX3X, eCLIP, K562
 
DDX3X, eCLIP, HepG2
    
DDX52 
DDX52, shRNA RNA-seq, K562
 
DDX52, shRNA RNA-seq, HepG2
  
DDX52, eCLIP, K562
 
DDX52, eCLIP, HepG2
    
DDX55 
DDX55, shRNA RNA-seq, K562
 
DDX55, shRNA RNA-seq, HepG2
  
DDX55, eCLIP, K562
 
DDX55, eCLIP, HepG2
    
DHX30 
DHX30, shRNA RNA-seq, K562
 
DHX30, shRNA RNA-seq, HepG2
  
DHX30, eCLIP, K562
 
DHX30, eCLIP, HepG2
    
DROSHA 
DROSHA, shRNA RNA-seq, K562
 
DROSHA, CRISPR RNA-seq, HepG2
  
DROSHA, eCLIP, K562
 
DROSHA, eCLIP, HepG2
    
EFTUD2 
EFTUD2, shRNA RNA-seq, K562
 
EFTUD2, shRNA RNA-seq, HepG2
  
EFTUD2, eCLIP, K562
 
EFTUD2, eCLIP, HepG2
    
EIF3D 
EIF3D, shRNA RNA-seq, K562
 
EIF3D, shRNA RNA-seq, HepG2
  
EIF3D, eCLIP, HepG2
  
EIF3D, RNA Bind-n-Seq, cell-free sample
   
EIF3H 
EIF3H, CRISPR RNA-seq, K562
 
EIF3H, CRISPR RNA-seq, HepG2
  
EIF3H, eCLIP, HepG2
    
EIF4A3 
EIF4A3, shRNA RNA-seq, K562
 
EIF4A3, shRNA RNA-seq, HepG2
 
EIF4A3, CRISPR RNA-seq, K562
 
EIF4A3, CRISPR RNA-seq, HepG2
     
EIF4G2 
EIF4G2, shRNA RNA-seq, K562
 
EIF4G2, shRNA RNA-seq, HepG2
  
EIF4G2, eCLIP, K562
  
EIF4G2, RNA Bind-n-Seq, cell-free sample
   
EWSR1 
EWSR1, shRNA RNA-seq, K562
 
EWSR1, shRNA RNA-seq, HepG2
  
EWSR1, eCLIP, K562
  
EWSR1, RNA Bind-n-Seq, cell-free sample
   
EXOSC5 
EXOSC5, CRISPR RNA-seq, K562
 
EXOSC5, CRISPR RNA-seq, HepG2
  
EXOSC5, eCLIP, K562
 
EXOSC5, eCLIP, HepG2
    
FAM120A 
FAM120A, shRNA RNA-seq, K562
 
FAM120A, shRNA RNA-seq, HepG2
  
FAM120A, eCLIP, K562
 
FAM120A, eCLIP, HepG2
    
FASTKD2 
FASTKD2, shRNA RNA-seq, K562
 
FASTKD2, shRNA RNA-seq, HepG2
  
FASTKD2, eCLIP, K562
 
FASTKD2, eCLIP, HepG2
    
FIP1L1 
FIP1L1, shRNA RNA-seq, K562
 
FIP1L1, shRNA RNA-seq, HepG2
    
FIP1L1, TF ChIP-seq, K562
 
FIP1L1, TF ChIP-seq, HepG2
  
FTO 
FTO, shRNA RNA-seq, K562
 
FTO, shRNA RNA-seq, HepG2
  
FTO, eCLIP, K562
 
FTO, eCLIP, HepG2
    
FUBP1 
FUBP1, shRNA RNA-seq, K562
 
FUBP1, shRNA RNA-seq, HepG2
   
FUBP1, RNA Bind-n-Seq, cell-free sample
   
FUBP1, iCLIP, K562
 
G3BP1 
G3BP1, shRNA RNA-seq, K562
 
G3BP1, shRNA RNA-seq, HepG2
 
G3BP1, CRISPR RNA-seq, K562
  
G3BP1, eCLIP, HepG2
    
GRWD1 
GRWD1, shRNA RNA-seq, K562
 
GRWD1, shRNA RNA-seq, HepG2
  
GRWD1, eCLIP, K562
 
GRWD1, eCLIP, HepG2
    
HLTF 
HLTF, shRNA RNA-seq, K562
 
HLTF, shRNA RNA-seq, HepG2
  
HLTF, eCLIP, K562
 
HLTF, eCLIP, HepG2
    
HNRNPA1 
HNRNPA1, shRNA RNA-seq, K562
 
HNRNPA1, shRNA RNA-seq, HepG2
  
HNRNPA1, eCLIP, K562
 
HNRNPA1, eCLIP, HepG2
    
HNRNPH1 
HNRNPH1, CRISPR RNA-seq, K562
 
HNRNPH1, CRISPR RNA-seq, HepG2
    
HNRNPH1, TF ChIP-seq, K562
 
HNRNPH1, TF ChIP-seq, HepG2
  
HNRNPM 
HNRNPM, shRNA RNA-seq, K562
 
HNRNPM, shRNA RNA-seq, HepG2
  
HNRNPM, eCLIP, K562
 
HNRNPM, eCLIP, HepG2
    
IGF2BP2 
IGF2BP2, shRNA RNA-seq, K562
 
IGF2BP2, shRNA RNA-seq, HepG2
  
IGF2BP2, eCLIP, K562
  
IGF2BP2, RNA Bind-n-Seq, cell-free sample
   
ILF3 
ILF3, shRNA RNA-seq, K562
 
ILF3, shRNA RNA-seq, HepG2
  
ILF3, eCLIP, K562
 
ILF3, eCLIP, HepG2
    
LARP4 
LARP4, shRNA RNA-seq, K562
 
LARP4, shRNA RNA-seq, HepG2
  
LARP4, eCLIP, K562
 
LARP4, eCLIP, HepG2
    
LARP7 
LARP7, shRNA RNA-seq, K562
 
LARP7, shRNA RNA-seq, HepG2
  
LARP7, eCLIP, K562
 
LARP7, eCLIP, HepG2
    
LSM11 
LSM11, shRNA RNA-seq, K562
 
LSM11, shRNA RNA-seq, HepG2
  
LSM11, eCLIP, K562
 
LSM11, eCLIP, HepG2
    
MATR3 
MATR3, shRNA RNA-seq, K562
 
MATR3, shRNA RNA-seq, HepG2
  
MATR3, eCLIP, K562
 
MATR3, eCLIP, HepG2
    
NCBP2 
NCBP2, shRNA RNA-seq, K562
 
NCBP2, shRNA RNA-seq, HepG2
  
NCBP2, eCLIP, K562
 
NCBP2, eCLIP, HepG2
    
NIP7 
NIP7, shRNA RNA-seq, HepG2
 
NIP7, CRISPR RNA-seq, K562
 
NIP7, CRISPR RNA-seq, HepG2
  
NIP7, eCLIP, HepG2
    
NOLC1 
NOLC1, CRISPR RNA-seq, K562
 
NOLC1, CRISPR RNA-seq, HepG2
  
NOLC1, eCLIP, K562
 
NOLC1, eCLIP, HepG2
    
NPM1 
NPM1, shRNA RNA-seq, K562
 
NPM1, shRNA RNA-seq, HepG2
 
NPM1, CRISPR RNA-seq, K562
  
NPM1, eCLIP, K562
    
NSUN2 
NSUN2, shRNA RNA-seq, K562
 
NSUN2, shRNA RNA-seq, HepG2
  
NSUN2, eCLIP, K562
  
NSUN2, RNA Bind-n-Seq, cell-free sample
   
PUM1 
PUM1, shRNA RNA-seq, K562
 
PUM1, shRNA RNA-seq, HepG2
  
PUM1, eCLIP, K562
  
PUM1, RNA Bind-n-Seq, cell-free sample
   
QKI 
QKI, shRNA RNA-seq, K562
 
QKI, shRNA RNA-seq, HepG2
  
QKI, eCLIP, K562
 
QKI, eCLIP, HepG2
    
RBM39 
RBM39, shRNA RNA-seq, K562
 
RBM39, shRNA RNA-seq, HepG2
    
RBM39, TF ChIP-seq, K562
 
RBM39, TF ChIP-seq, HepG2
  
RPS3 
RPS3, CRISPR RNA-seq, K562
  
RPS3, eCLIP, K562
 
RPS3, eCLIP, HepG2
    
SDAD1 
SDAD1, CRISPR RNA-seq, K562
 
SDAD1, CRISPR RNA-seq, HepG2
  
SDAD1, eCLIP, K562
 
SDAD1, eCLIP, HepG2
    
SF1 
SF1, shRNA RNA-seq, K562
 
SF1, shRNA RNA-seq, HepG2
   
SF1, RNA Bind-n-Seq, cell-free sample
   
SF3B1 
SF3B1, shRNA RNA-seq, K562
 
SF3B1, shRNA RNA-seq, HepG2
 
SF3B1, CRISPR RNA-seq, K562
  
SF3B1, eCLIP, K562
    
SF3B4 
SF3B4, shRNA RNA-seq, K562
 
SF3B4, shRNA RNA-seq, HepG2
  
SF3B4, eCLIP, K562
 
SF3B4, eCLIP, HepG2
    
SLTM 
SLTM, shRNA RNA-seq, K562
 
SLTM, shRNA RNA-seq, HepG2
  
SLTM, eCLIP, K562
 
SLTM, eCLIP, HepG2
    
SMNDC1 
SMNDC1, shRNA RNA-seq, K562
 
SMNDC1, shRNA RNA-seq, HepG2
  
SMNDC1, eCLIP, K562
 
SMNDC1, eCLIP, HepG2
    
SND1 
SND1, shRNA RNA-seq, K562
 
SND1, shRNA RNA-seq, HepG2
  
SND1, eCLIP, K562
 
SND1, eCLIP, HepG2
    
SRSF5 
SRSF5, shRNA RNA-seq, K562
 
SRSF5, shRNA RNA-seq, HepG2
 
SRSF5, CRISPR RNA-seq, K562
   
SRSF5, RNA Bind-n-Seq, cell-free sample
   
SSB 
SSB, shRNA RNA-seq, K562
 
SSB, shRNA RNA-seq, HepG2
  
SSB, eCLIP, K562
 
SSB, eCLIP, HepG2
    
SUPV3L1 
SUPV3L1, shRNA RNA-seq, K562
 
SUPV3L1, shRNA RNA-seq, HepG2
  
SUPV3L1, eCLIP, K562
 
SUPV3L1, eCLIP, HepG2
    
TBRG4 
TBRG4, shRNA RNA-seq, K562
 
TBRG4, shRNA RNA-seq, HepG2
  
TBRG4, eCLIP, K562
 
TBRG4, eCLIP, HepG2
    
UCHL5 
UCHL5, shRNA RNA-seq, K562
 
UCHL5, shRNA RNA-seq, HepG2
  
UCHL5, eCLIP, K562
 
UCHL5, eCLIP, HepG2
    
UPF1 
UPF1, shRNA RNA-seq, K562
 
UPF1, shRNA RNA-seq, HepG2
  
UPF1, eCLIP, K562
 
UPF1, eCLIP, HepG2
    
UTP18 
UTP18, shRNA RNA-seq, K562
 
UTP18, shRNA RNA-seq, HepG2
  
UTP18, eCLIP, K562
 
UTP18, eCLIP, HepG2
    
UTP3 
UTP3, shRNA RNA-seq, K562
 
UTP3, shRNA RNA-seq, HepG2
  
UTP3, eCLIP, K562
    
WDR43 
WDR43, shRNA RNA-seq, K562
 
WDR43, CRISPR RNA-seq, HepG2
  
WDR43, eCLIP, K562
 
WDR43, eCLIP, HepG2
    
XRN2 
XRN2, shRNA RNA-seq, K562
 
XRN2, shRNA RNA-seq, HepG2
  
XRN2, eCLIP, K562
 
XRN2, eCLIP, HepG2
    
YBX3 
YBX3, shRNA RNA-seq, K562
 
YBX3, shRNA RNA-seq, HepG2
  
YBX3, eCLIP, K562
 
YBX3, eCLIP, HepG2
    
ZC3H11A 
ZC3H11A, CRISPR RNA-seq, K562
 
ZC3H11A, CRISPR RNA-seq, HepG2
  
ZC3H11A, eCLIP, K562
 
ZC3H11A, eCLIP, HepG2
    
ZC3H8 
ZC3H8, shRNA RNA-seq, K562
 
ZC3H8, shRNA RNA-seq, HepG2
  
ZC3H8, eCLIP, K562
    
ZRANB2 
ZRANB2, shRNA RNA-seq, K562
 
ZRANB2, shRNA RNA-seq, HepG2
  
ZRANB2, eCLIP, K562
  
ZRANB2, RNA Bind-n-Seq, cell-free sample
   
AARS 
AARS, shRNA RNA-seq, K562
 
AARS, shRNA RNA-seq, HepG2
  
AARS, eCLIP, K562
    
AATF 
AATF, shRNA RNA-seq, K562
 
AATF, shRNA RNA-seq, HepG2
  
AATF, eCLIP, K562
    
ABCF1 
ABCF1, shRNA RNA-seq, K562
 
ABCF1, shRNA RNA-seq, HepG2
  
ABCF1, eCLIP, K562
    
BCCIP 
BCCIP, shRNA RNA-seq, K562
 
BCCIP, shRNA RNA-seq, HepG2
  
BCCIP, eCLIP, HepG2
    
BCLAF1 
BCLAF1, shRNA RNA-seq, K562
 
BCLAF1, shRNA RNA-seq, HepG2
  
BCLAF1, eCLIP, HepG2
    
CDC40 
CDC40, CRISPR RNA-seq, K562
 
CDC40, CRISPR RNA-seq, HepG2
  
CDC40, eCLIP, HepG2
    
CKAP4 
CKAP4, shRNA RNA-seq, K562
 
CKAP4, shRNA RNA-seq, HepG2
     
CNOT7 
CNOT7, shRNA RNA-seq, K562
 
CNOT7, shRNA RNA-seq, HepG2
 
CNOT7, CRISPR RNA-seq, HepG2
     
CPSF6 
CPSF6, shRNA RNA-seq, K562
 
CPSF6, shRNA RNA-seq, HepG2
  
CPSF6, eCLIP, K562
    
CSTF2 
CSTF2, shRNA RNA-seq, K562
 
CSTF2, shRNA RNA-seq, HepG2
  
CSTF2, eCLIP, HepG2
    
DAZAP1 
DAZAP1, shRNA RNA-seq, K562
 
DAZAP1, shRNA RNA-seq, HepG2
   
DAZAP1, RNA Bind-n-Seq, cell-free sample
   
DDX21 
DDX21, shRNA RNA-seq, HepG2
 
DDX21, CRISPR RNA-seq, K562
  
DDX21, eCLIP, K562
    
DDX24 
DDX24, shRNA RNA-seq, K562
 
DDX24, shRNA RNA-seq, HepG2
  
DDX24, eCLIP, K562
    
DDX42 
DDX42, CRISPR RNA-seq, K562
 
DDX42, CRISPR RNA-seq, HepG2
  
DDX42, eCLIP, K562
    
DDX47 
DDX47, shRNA RNA-seq, K562
 
DDX47, shRNA RNA-seq, HepG2
     
DDX51 
DDX51, shRNA RNA-seq, K562
 
DDX51, CRISPR RNA-seq, HepG2
  
DDX51, eCLIP, K562
    
DDX59 
DDX59, shRNA RNA-seq, HepG2
 
DDX59, CRISPR RNA-seq, K562
  
DDX59, eCLIP, HepG2
    
DKC1 
DKC1, shRNA RNA-seq, K562
 
DKC1, shRNA RNA-seq, HepG2
  
DKC1, eCLIP, HepG2
    
EIF3G 
EIF3G, shRNA RNA-seq, K562
 
EIF3G, shRNA RNA-seq, HepG2
  
EIF3G, eCLIP, K562
    
EIF4B 
EIF4B, shRNA RNA-seq, K562
 
EIF4B, shRNA RNA-seq, HepG2
 
EIF4B, CRISPR RNA-seq, HepG2
     
EIF4G1 
EIF4G1, shRNA RNA-seq, K562
 
EIF4G1, shRNA RNA-seq, HepG2
     
EIF4G1, iCLIP, K562
 
FKBP4 
FKBP4, shRNA RNA-seq, K562
 
FKBP4, shRNA RNA-seq, HepG2
  
FKBP4, eCLIP, HepG2
    
FMR1 
FMR1, shRNA RNA-seq, K562
 
FMR1, shRNA RNA-seq, HepG2
  
FMR1, eCLIP, K562
    
FXR1 
FXR1, shRNA RNA-seq, K562
 
FXR1, shRNA RNA-seq, HepG2
  
FXR1, eCLIP, K562
    
GEMIN5 
GEMIN5, shRNA RNA-seq, K562
 
GEMIN5, shRNA RNA-seq, HepG2
  
GEMIN5, eCLIP, K562
    
GNL3 
GNL3, CRISPR RNA-seq, K562
 
GNL3, CRISPR RNA-seq, HepG2
  
GNL3, eCLIP, K562
    
GPKOW 
GPKOW, shRNA RNA-seq, K562
 
GPKOW, shRNA RNA-seq, HepG2
  
GPKOW, eCLIP, K562
    
GRSF1 
GRSF1, shRNA RNA-seq, K562
 
GRSF1, shRNA RNA-seq, HepG2
  
GRSF1, eCLIP, HepG2
    
HNRNPA0 
HNRNPA0, shRNA RNA-seq, K562
 
HNRNPA0, shRNA RNA-seq, HepG2
   
HNRNPA0, RNA Bind-n-Seq, cell-free sample
   
HNRNPA2B1 
HNRNPA2B1, shRNA RNA-seq, K562
 
HNRNPA2B1, shRNA RNA-seq, HepG2
   
HNRNPA2B1, RNA Bind-n-Seq, cell-free sample
   
HNRNPF 
HNRNPF, shRNA RNA-seq, K562
 
HNRNPF, CRISPR RNA-seq, HepG2
   
HNRNPF, RNA Bind-n-Seq, cell-free sample
   
HNRNPLL 
HNRNPLL, shRNA RNA-seq, HepG2
    
HNRNPLL, TF ChIP-seq, K562
 
HNRNPLL, TF ChIP-seq, HepG2
  
ILF2 
ILF2, shRNA RNA-seq, K562
 
ILF2, shRNA RNA-seq, HepG2
   
ILF2, RNA Bind-n-Seq, cell-free sample
   
KHDRBS1 
KHDRBS1, shRNA RNA-seq, K562
 
KHDRBS1, shRNA RNA-seq, HepG2
  
KHDRBS1, eCLIP, K562
    
METAP2 
METAP2, shRNA RNA-seq, K562
 
METAP2, shRNA RNA-seq, HepG2
  
METAP2, eCLIP, K562
    
MTPAP 
MTPAP, shRNA RNA-seq, K562
 
MTPAP, shRNA RNA-seq, HepG2
  
MTPAP, eCLIP, K562
    
NKRF 
NKRF, shRNA RNA-seq, K562
 
NKRF, shRNA RNA-seq, HepG2
  
NKRF, eCLIP, HepG2
    
NOL12 
NOL12, shRNA RNA-seq, K562
 
NOL12, shRNA RNA-seq, HepG2
  
NOL12, eCLIP, HepG2
    
PABPC4 
PABPC4, shRNA RNA-seq, K562
 
PABPC4, shRNA RNA-seq, HepG2
  
PABPC4, eCLIP, K562
    
PES1 
PES1, shRNA RNA-seq, K562
 
PES1, shRNA RNA-seq, HepG2
 
PES1, CRISPR RNA-seq, K562
     
PHF6 
PHF6, shRNA RNA-seq, K562
 
PHF6, shRNA RNA-seq, HepG2
  
PHF6, eCLIP, K562
    
PPIG 
PPIG, shRNA RNA-seq, K562
 
PPIG, shRNA RNA-seq, HepG2
  
PPIG, eCLIP, HepG2
    
PPIL4 
PPIL4, shRNA RNA-seq, K562
 
PPIL4, shRNA RNA-seq, HepG2
  
PPIL4, eCLIP, K562
    
PPP1R10 
PPP1R10, CRISPR RNA-seq, K562
 
PPP1R10, CRISPR RNA-seq, HepG2
   
PPP1R10, RNA Bind-n-Seq, cell-free sample
   
PUF60 
PUF60, shRNA RNA-seq, K562
 
PUF60, shRNA RNA-seq, HepG2
   
PUF60, RNA Bind-n-Seq, cell-free sample
   
PUM2 
PUM2, shRNA RNA-seq, K562
 
PUM2, shRNA RNA-seq, HepG2
  
PUM2, eCLIP, K562
    
PUS1 
PUS1, shRNA RNA-seq, K562
 
PUS1, shRNA RNA-seq, HepG2
  
PUS1, eCLIP, K562
    
RBM17 
RBM17, shRNA RNA-seq, K562
 
RBM17, shRNA RNA-seq, HepG2
    
RBM17, TF ChIP-seq, K562
  
RBM34 
RBM34, shRNA RNA-seq, K562
 
RBM34, shRNA RNA-seq, HepG2
    
RBM34, TF ChIP-seq, K562
  
RBM5 
RBM5, CRISPR RNA-seq, HepG2
  
RBM5, eCLIP, HepG2
  
RBM5, RNA Bind-n-Seq, cell-free sample
   
RECQL 
RECQL, shRNA RNA-seq, K562
 
RECQL, shRNA RNA-seq, HepG2
     
RPL23A 
RPL23A, shRNA RNA-seq, HepG2
 
RPL23A, CRISPR RNA-seq, K562
 
RPL23A, CRISPR RNA-seq, HepG2
     
RPS11 
RPS11, shRNA RNA-seq, K562
 
RPS11, CRISPR RNA-seq, K562
  
RPS11, eCLIP, K562
    
SBDS 
SBDS, shRNA RNA-seq, K562
 
SBDS, shRNA RNA-seq, HepG2
  
SBDS, eCLIP, K562
    
SERBP1 
SERBP1, shRNA RNA-seq, K562
 
SERBP1, shRNA RNA-seq, HepG2
  
SERBP1, eCLIP, K562
    
SF3A3 
SF3A3, shRNA RNA-seq, K562
 
SF3A3, shRNA RNA-seq, HepG2
  
SF3A3, eCLIP, HepG2
    
SLBP 
SLBP, shRNA RNA-seq, K562
 
SLBP, shRNA RNA-seq, HepG2
  
SLBP, eCLIP, K562
    
SNRNP70 
SNRNP70, shRNA RNA-seq, HepG2
    
SNRNP70, TF ChIP-seq, K562
 
SNRNP70, TF ChIP-seq, HepG2
  
SRSF3 
SRSF3, shRNA RNA-seq, HepG2
 
SRSF3, CRISPR RNA-seq, K562
    
SRSF3, TF ChIP-seq, K562
  
STAU2 
STAU2, CRISPR RNA-seq, K562
 
STAU2, CRISPR RNA-seq, HepG2
  
STAU2, eCLIP, HepG2
    
SUB1 
SUB1, shRNA RNA-seq, K562
 
SUB1, shRNA RNA-seq, HepG2
  
SUB1, eCLIP, HepG2
    
SUCLG1 
SUCLG1, shRNA RNA-seq, K562
 
SUCLG1, shRNA RNA-seq, HepG2
   
SUCLG1, RNA Bind-n-Seq, cell-free sample
   
SUGP2 
SUGP2, shRNA RNA-seq, K562
 
SUGP2, shRNA RNA-seq, HepG2
  
SUGP2, eCLIP, HepG2
    
TIAL1 
TIAL1, shRNA RNA-seq, K562
 
TIAL1, shRNA RNA-seq, HepG2
  
TIAL1, eCLIP, HepG2
    
TRNAU1AP 
TRNAU1AP, CRISPR RNA-seq, K562
 
TRNAU1AP, CRISPR RNA-seq, HepG2
   
TRNAU1AP, RNA Bind-n-Seq, cell-free sample
   
WDR3 
WDR3, shRNA RNA-seq, K562
 
WDR3, shRNA RNA-seq, HepG2
  
WDR3, eCLIP, K562
    
WRN 
WRN, shRNA RNA-seq, K562
 
WRN, shRNA RNA-seq, HepG2
  
WRN, eCLIP, K562
    
XPO5 
XPO5, shRNA RNA-seq, K562
 
XPO5, shRNA RNA-seq, HepG2
  
XPO5, eCLIP, HepG2
    
YWHAG 
YWHAG, shRNA RNA-seq, HepG2
 
YWHAG, CRISPR RNA-seq, K562
  
YWHAG, eCLIP, K562
    
ZNF800 
ZNF800, CRISPR RNA-seq, K562
  
ZNF800, eCLIP, K562
 
ZNF800, eCLIP, HepG2
    
ABT1 
ABT1, shRNA RNA-seq, K562
 
ABT1, shRNA RNA-seq, HepG2
     
ACO1 
ACO1, shRNA RNA-seq, HepG2
 
ACO1, CRISPR RNA-seq, K562
     
ADAR 
ADAR, shRNA RNA-seq, K562
 
ADAR, shRNA RNA-seq, HepG2
     
AGO2 
AGO2, shRNA RNA-seq, K562
    
AGO2, TF ChIP-seq, HepG2
  
AKAP8 
AKAP8, shRNA RNA-seq, K562
 
AKAP8, shRNA RNA-seq, HepG2
     
APEX1 
APEX1, CRISPR RNA-seq, K562
 
APEX1, CRISPR RNA-seq, HepG2
     
ASCC1 
ASCC1, shRNA RNA-seq, K562
 
ASCC1, shRNA RNA-seq, HepG2
     
ATP5C1 
ATP5C1, shRNA RNA-seq, K562
 
ATP5C1, shRNA RNA-seq, HepG2
     
AUH 
AUH, shRNA RNA-seq, K562
 
AUH, shRNA RNA-seq, HepG2
     
BAZ1A 
BAZ1A, CRISPR RNA-seq, K562
 
BAZ1A, CRISPR RNA-seq, HepG2
     
BOP1 
BOP1, shRNA RNA-seq, K562
 
BOP1, shRNA RNA-seq, HepG2
     
CCAR1 
CCAR1, shRNA RNA-seq, K562
 
CCAR1, shRNA RNA-seq, HepG2
     
CD3EAP 
CD3EAP, CRISPR RNA-seq, K562
 
CD3EAP, CRISPR RNA-seq, HepG2
     
CEBPZ 
CEBPZ, shRNA RNA-seq, HepG2
 
CEBPZ, CRISPR RNA-seq, K562
     
CENPI 
CENPI, CRISPR RNA-seq, K562
 
CENPI, CRISPR RNA-seq, HepG2
     
CIZ1 
CIZ1, CRISPR RNA-seq, K562
 
CIZ1, CRISPR RNA-seq, HepG2
     
CPEB4 
CPEB4, shRNA RNA-seq, K562
  
CPEB4, eCLIP, K562
    
CPSF7 
CPSF7, shRNA RNA-seq, K562
 
CPSF7, shRNA RNA-seq, HepG2
     
CTCF 
CTCF, CRISPR RNA-seq, K562
 
CTCF, CRISPR RNA-seq, HepG2
     
CXXC1 
CXXC1, CRISPR RNA-seq, K562
 
CXXC1, CRISPR RNA-seq, HepG2
     
DDX1 
DDX1, shRNA RNA-seq, K562
 
DDX1, shRNA RNA-seq, HepG2
     
DDX19B 
DDX19B, shRNA RNA-seq, K562
 
DDX19B, shRNA RNA-seq, HepG2
     
DDX20 
DDX20, CRISPR RNA-seq, K562
 
DDX20, CRISPR RNA-seq, HepG2
     
DDX27 
DDX27, shRNA RNA-seq, K562
 
DDX27, shRNA RNA-seq, HepG2
     
DDX28 
DDX28, shRNA RNA-seq, K562
 
DDX28, shRNA RNA-seq, HepG2
     
DDX39B 
DDX39B, CRISPR RNA-seq, K562
 
DDX39B, CRISPR RNA-seq, HepG2
     
DHX57 
DHX57, CRISPR RNA-seq, K562
 
DHX57, CRISPR RNA-seq, HepG2
     
DICER1 
DICER1, CRISPR RNA-seq, K562
 
DICER1, CRISPR RNA-seq, HepG2
     
DNAJC2 
DNAJC2, shRNA RNA-seq, K562
 
DNAJC2, shRNA RNA-seq, HepG2
     
DNAJC21 
DNAJC21, shRNA RNA-seq, K562
 
DNAJC21, shRNA RNA-seq, HepG2
     
DUS3L 
DUS3L, CRISPR RNA-seq, K562
 
DUS3L, CRISPR RNA-seq, HepG2
     
E4F1 
E4F1, CRISPR RNA-seq, K562
 
E4F1, CRISPR RNA-seq, HepG2
     
EEF2 
EEF2, shRNA RNA-seq, K562
 
EEF2, shRNA RNA-seq, HepG2
     
EIF2B3 
EIF2B3, CRISPR RNA-seq, K562
 
EIF2B3, CRISPR RNA-seq, HepG2
     
EIF2S1 
EIF2S1, shRNA RNA-seq, K562
 
EIF2S1, shRNA RNA-seq, HepG2
     
EIF2S2 
EIF2S2, shRNA RNA-seq, K562
 
EIF2S2, shRNA RNA-seq, HepG2
     
EIF4E 
EIF4E, CRISPR RNA-seq, K562
 
EIF4E, CRISPR RNA-seq, HepG2
     
ELAVL1 
ELAVL1, CRISPR RNA-seq, K562
 
ELAVL1, CRISPR RNA-seq, HepG2
     
ERN1 
ERN1, CRISPR RNA-seq, K562
 
ERN1, CRISPR RNA-seq, HepG2
     
ERO1A 
ERO1A, CRISPR RNA-seq, K562
 
ERO1A, CRISPR RNA-seq, HepG2
     
ESF1 
ESF1, shRNA RNA-seq, K562
 
ESF1, shRNA RNA-seq, HepG2
     
ETF1 
ETF1, shRNA RNA-seq, HepG2
 
ETF1, CRISPR RNA-seq, K562
     
EXOSC9 
EXOSC9, shRNA RNA-seq, K562
 
EXOSC9, shRNA RNA-seq, HepG2
     
FBL 
FBL, CRISPR RNA-seq, K562
 
FBL, CRISPR RNA-seq, HepG2
     
G3BP2 
G3BP2, shRNA RNA-seq, K562
 
G3BP2, shRNA RNA-seq, HepG2
     
GARS 
GARS, CRISPR RNA-seq, K562
 
GARS, CRISPR RNA-seq, HepG2
     
GEMIN2 
GEMIN2, CRISPR RNA-seq, K562
 
GEMIN2, CRISPR RNA-seq, HepG2
     
GLRX3 
GLRX3, shRNA RNA-seq, K562
 
GLRX3, CRISPR RNA-seq, HepG2
     
GSK3A 
GSK3A, CRISPR RNA-seq, K562
 
GSK3A, CRISPR RNA-seq, HepG2
     
GSK3B 
GSK3B, CRISPR RNA-seq, K562
 
GSK3B, CRISPR RNA-seq, HepG2
     
HDGF 
HDGF, shRNA RNA-seq, K562
 
HDGF, shRNA RNA-seq, HepG2
     
HNRNPAB 
HNRNPAB, shRNA RNA-seq, K562
 
HNRNPAB, shRNA RNA-seq, HepG2
     
HNRNPD 
HNRNPD, shRNA RNA-seq, HepG2
   
HNRNPD, RNA Bind-n-Seq, cell-free sample
   
HSPD1 
HSPD1, shRNA RNA-seq, K562
 
HSPD1, shRNA RNA-seq, HepG2
     
IFIT2 
IFIT2, CRISPR RNA-seq, K562
 
IFIT2, CRISPR RNA-seq, HepG2
     
KIF1C 
KIF1C, shRNA RNA-seq, K562
 
KIF1C, shRNA RNA-seq, HepG2
     
KPNB1 
KPNB1, CRISPR RNA-seq, K562
 
KPNB1, CRISPR RNA-seq, HepG2
     
KRR1 
KRR1, shRNA RNA-seq, K562
 
KRR1, shRNA RNA-seq, HepG2
     
MAGOH 
MAGOH, shRNA RNA-seq, K562
 
MAGOH, shRNA RNA-seq, HepG2
     
MAK16 
MAK16, shRNA RNA-seq, K562
 
MAK16, CRISPR RNA-seq, HepG2
     
MARK2 
MARK2, shRNA RNA-seq, K562
 
MARK2, shRNA RNA-seq, HepG2
     
MBNL1 
MBNL1, shRNA RNA-seq, K562
   
MBNL1, RNA Bind-n-Seq, cell-free sample
   
MECP2 
MECP2, CRISPR RNA-seq, K562
 
MECP2, CRISPR RNA-seq, HepG2
     
MORC2 
MORC2, CRISPR RNA-seq, K562
 
MORC2, CRISPR RNA-seq, HepG2
     
MSI2 
MSI2, shRNA RNA-seq, K562
 
MSI2, shRNA RNA-seq, HepG2
     
NAA15 
NAA15, shRNA RNA-seq, K562
 
NAA15, shRNA RNA-seq, HepG2
     
NCBP1 
NCBP1, CRISPR RNA-seq, K562
 
NCBP1, CRISPR RNA-seq, HepG2
     
NCL 
NCL, CRISPR RNA-seq, K562
 
NCL, CRISPR RNA-seq, HepG2
     
NELFE 
NELFE, shRNA RNA-seq, K562
 
NELFE, shRNA RNA-seq, HepG2
     
NFX1 
NFX1, shRNA RNA-seq, K562
 
NFX1, CRISPR RNA-seq, HepG2
     
NIPBL 
NIPBL, CRISPR RNA-seq, K562
  
NIPBL, eCLIP, K562
    
NSUN4 
NSUN4, CRISPR RNA-seq, K562
 
NSUN4, CRISPR RNA-seq, HepG2
     
NUFIP2 
NUFIP2, shRNA RNA-seq, K562
 
NUFIP2, shRNA RNA-seq, HepG2
     
NUP35 
NUP35, shRNA RNA-seq, K562
 
NUP35, shRNA RNA-seq, HepG2
     
NUSAP1 
NUSAP1, shRNA RNA-seq, K562
 
NUSAP1, shRNA RNA-seq, HepG2
     
PA2G4 
PA2G4, shRNA RNA-seq, K562
 
PA2G4, shRNA RNA-seq, HepG2
     
PABPC1 
PABPC1, shRNA RNA-seq, K562
 
PABPC1, shRNA RNA-seq, HepG2
     
PABPN1 
PABPN1, shRNA RNA-seq, K562
  
PABPN1, eCLIP, HepG2
    
PARN 
PARN, shRNA RNA-seq, K562
 
PARN, shRNA RNA-seq, HepG2
     
PARP1 
PARP1, CRISPR RNA-seq, K562
 
PARP1, CRISPR RNA-seq, HepG2
     
PDCD4 
PDCD4, CRISPR RNA-seq, K562
 
PDCD4, CRISPR RNA-seq, HepG2
     
PKM 
PKM, shRNA RNA-seq, K562
 
PKM, shRNA RNA-seq, HepG2
     
PNPT1 
PNPT1, shRNA RNA-seq, K562
 
PNPT1, shRNA RNA-seq, HepG2
     
PPP1R8 
PPP1R8, shRNA RNA-seq, K562
 
PPP1R8, CRISPR RNA-seq, HepG2
     
PRPF6 
PRPF6, shRNA RNA-seq, K562
 
PRPF6, shRNA RNA-seq, HepG2
     
PSIP1 
PSIP1, shRNA RNA-seq, K562
 
PSIP1, shRNA RNA-seq, HepG2
     
PTGES3 
PTGES3, CRISPR RNA-seq, K562
 
PTGES3, CRISPR RNA-seq, HepG2
     
RAE1 
RAE1, CRISPR RNA-seq, K562
 
RAE1, CRISPR RNA-seq, HepG2
     
RAVER1 
RAVER1, shRNA RNA-seq, K562
 
RAVER1, shRNA RNA-seq, HepG2
     
RBM14 
RBM14, CRISPR RNA-seq, HepG2
    
RBM14, TF ChIP-seq, K562
  
RBM19 
RBM19, CRISPR RNA-seq, K562
 
RBM19, CRISPR RNA-seq, HepG2
     
RBM3 
RBM3, shRNA RNA-seq, K562
   
RBM3, RNA Bind-n-Seq, cell-free sample
   
RBM47 
RBM47, shRNA RNA-seq, HepG2
   
RBM47, RNA Bind-n-Seq, cell-free sample
   
RCC2 
RCC2, shRNA RNA-seq, K562
 
RCC2, shRNA RNA-seq, HepG2
     
RNF187 
RNF187, CRISPR RNA-seq, K562
 
RNF187, CRISPR RNA-seq, HepG2
     
RPL11 
RPL11, CRISPR RNA-seq, K562
 
RPL11, CRISPR RNA-seq, HepG2
     
RPL28 
RPL28, CRISPR RNA-seq, K562
 
RPL28, CRISPR RNA-seq, HepG2
     
RPLP0 
RPLP0, CRISPR RNA-seq, K562
 
RPLP0, CRISPR RNA-seq, HepG2
     
RPS10 
RPS10, shRNA RNA-seq, K562
 
RPS10, shRNA RNA-seq, HepG2
     
RPS19 
RPS19, shRNA RNA-seq, K562
 
RPS19, shRNA RNA-seq, HepG2
     
RPS3A 
RPS3A, shRNA RNA-seq, K562
 
RPS3A, shRNA RNA-seq, HepG2
     
RRP9 
RRP9, shRNA RNA-seq, K562
 
RRP9, shRNA RNA-seq, HepG2
     
RTF1 
RTF1, shRNA RNA-seq, K562
 
RTF1, shRNA RNA-seq, HepG2
     
RYBP 
RYBP, CRISPR RNA-seq, K562
 
RYBP, CRISPR RNA-seq, HepG2
     
SART3 
SART3, shRNA RNA-seq, K562
 
SART3, shRNA RNA-seq, HepG2
     
SF3A1 
SF3A1, CRISPR RNA-seq, K562
 
SF3A1, CRISPR RNA-seq, HepG2
     
SMAD2 
SMAD2, CRISPR RNA-seq, K562
 
SMAD2, CRISPR RNA-seq, HepG2
     
SMAD4 
SMAD4, CRISPR RNA-seq, K562
 
SMAD4, CRISPR RNA-seq, HepG2
     
SMAD5 
SMAD5, CRISPR RNA-seq, K562
 
SMAD5, CRISPR RNA-seq, HepG2
     
SMN1 
SMN1, shRNA RNA-seq, K562
 
SMN1, shRNA RNA-seq, HepG2
     
SMYD3 
SMYD3, CRISPR RNA-seq, K562
 
SMYD3, CRISPR RNA-seq, HepG2
     
SNRNP200 
SNRNP200, shRNA RNA-seq, K562
 
SNRNP200, shRNA RNA-seq, HepG2
     
SRFBP1 
SRFBP1, shRNA RNA-seq, K562
 
SRFBP1, shRNA RNA-seq, HepG2
     
SRP68 
SRP68, shRNA RNA-seq, K562
 
SRP68, shRNA RNA-seq, HepG2
     
SRPK2 
SRPK2, shRNA RNA-seq, K562
 
SRPK2, CRISPR RNA-seq, HepG2
     
SSRP1 
SSRP1, shRNA RNA-seq, K562
 
SSRP1, shRNA RNA-seq, HepG2
     
STAU1 
STAU1, shRNA RNA-seq, K562
 
STAU1, shRNA RNA-seq, HepG2
     
STIP1 
STIP1, shRNA RNA-seq, K562
 
STIP1, shRNA RNA-seq, HepG2
     
SUPT6H 
SUPT6H, shRNA RNA-seq, K562
 
SUPT6H, shRNA RNA-seq, HepG2
     
SUZ12 
SUZ12, CRISPR RNA-seq, K562
 
SUZ12, CRISPR RNA-seq, HepG2
     
SYNCRIP 
SYNCRIP, CRISPR RNA-seq, K562
    
SYNCRIP, TF ChIP-seq, HepG2
  
TAF9 
TAF9, CRISPR RNA-seq, K562
 
TAF9, CRISPR RNA-seq, HepG2
     
TFIP11 
TFIP11, shRNA RNA-seq, K562
 
TFIP11, shRNA RNA-seq, HepG2
     
THOC1 
THOC1, CRISPR RNA-seq, K562
 
THOC1, CRISPR RNA-seq, HepG2
     
TRIM56 
TRIM56, shRNA RNA-seq, K562
 
TRIM56, shRNA RNA-seq, HepG2
     
TUFM 
TUFM, shRNA RNA-seq, K562
 
TUFM, shRNA RNA-seq, HepG2
     
UBE2L3 
UBE2L3, shRNA RNA-seq, K562
 
UBE2L3, shRNA RNA-seq, HepG2
     
UPF2 
UPF2, shRNA RNA-seq, K562
 
UPF2, shRNA RNA-seq, HepG2
     
XPO1 
XPO1, shRNA RNA-seq, K562
 
XPO1, shRNA RNA-seq, HepG2
     
XRN1 
XRN1, shRNA RNA-seq, K562
 
XRN1, shRNA RNA-seq, HepG2
     
YBX1 
YBX1, CRISPR RNA-seq, K562
 
YBX1, CRISPR RNA-seq, HepG2
     
YTHDC2 
YTHDC2, shRNA RNA-seq, K562
 
YTHDC2, shRNA RNA-seq, HepG2
     
ZNF106 
ZNF106, CRISPR RNA-seq, K562
 
ZNF106, CRISPR RNA-seq, HepG2
     
ZNF574 
ZNF574, CRISPR RNA-seq, K562
 
ZNF574, CRISPR RNA-seq, HepG2
     
ZNF622 
ZNF622, shRNA RNA-seq, HepG2
  
ZNF622, eCLIP, K562
    
A1CF   
A1CF, RNA Bind-n-Seq, cell-free sample
   
AGO3 
AGO3, shRNA RNA-seq, K562
     
ANXA2 
ANXA2, CRISPR RNA-seq, HepG2
     
BOLL   
BOLL, RNA Bind-n-Seq, cell-free sample
   
CALR 
CALR, shRNA RNA-seq, HepG2
     
CCDC124 
CCDC124, shRNA RNA-seq, K562
     
CHD3 
CHD3, CRISPR RNA-seq, HepG2
     
CHTOP 
CHTOP, CRISPR RNA-seq, K562
     
CNOT10 
CNOT10, CRISPR RNA-seq, K562
     
CNOT4   
CNOT4, RNA Bind-n-Seq, cell-free sample
   
CNOT8 
CNOT8, shRNA RNA-seq, K562
     
CPEB1   
CPEB1, RNA Bind-n-Seq, cell-free sample
   
CPSF4 
CPSF4, CRISPR RNA-seq, K562
     
CSTF1 
CSTF1, CRISPR RNA-seq, K562
     
DAZ3   
DAZ3, RNA Bind-n-Seq, cell-free sample
   
DCP2 
DCP2, CRISPR RNA-seq, K562
     
DDX5 
DDX5, shRNA RNA-seq, HepG2
     
DNMT1 
DNMT1, CRISPR RNA-seq, K562
     
DNMT3B 
DNMT3B, CRISPR RNA-seq, HepG2
     
EIF2AK1 
EIF2AK1, CRISPR RNA-seq, K562
     
EIF2AK2 
EIF2AK2, CRISPR RNA-seq, K562
     
EIF3A 
EIF3A, shRNA RNA-seq, K562
     
ELAVL4   
ELAVL4, RNA Bind-n-Seq, cell-free sample
   
ESRP1   
ESRP1, RNA Bind-n-Seq, cell-free sample
   
EXOSC10 
EXOSC10, CRISPR RNA-seq, K562
     
EXOSC2 
EXOSC2, CRISPR RNA-seq, K562
     
FASTKD1 
FASTKD1, shRNA RNA-seq, HepG2
     
FYTTD1 
FYTTD1, CRISPR RNA-seq, K562
     
GNB2L1 
GNB2L1, shRNA RNA-seq, HepG2
     
GSPT2 
GSPT2, CRISPR RNA-seq, K562
     
HNRNPCL1   
HNRNPCL1, RNA Bind-n-Seq, cell-free sample
   
HNRNPDL   
HNRNPDL, RNA Bind-n-Seq, cell-free sample
   
HNRNPH2   
HNRNPH2, RNA Bind-n-Seq, cell-free sample
   
KHDRBS2   
KHDRBS2, RNA Bind-n-Seq, cell-free sample
   
KHDRBS3   
KHDRBS3, RNA Bind-n-Seq, cell-free sample
   
LSM7 
LSM7, CRISPR RNA-seq, K562
     
MDM2 
MDM2, CRISPR RNA-seq, K562
     
MSI1   
MSI1, RNA Bind-n-Seq, cell-free sample
   
NOVA1   
NOVA1, RNA Bind-n-Seq, cell-free sample
   
NSUN5 
NSUN5, CRISPR RNA-seq, K562
     
NUPL2   
NUPL2, RNA Bind-n-Seq, cell-free sample
   
PABPC3   
PABPC3, RNA Bind-n-Seq, cell-free sample
   
PABPN1L   
PABPN1L, RNA Bind-n-Seq, cell-free sample
   
PAN2 
PAN2, CRISPR RNA-seq, K562
     
PAPOLA 
PAPOLA, shRNA RNA-seq, K562
     
PCBP3 
PCBP3, CRISPR RNA-seq, K562
     
PCBP4   
PCBP4, RNA Bind-n-Seq, cell-free sample
   
POLR2A 
POLR2A, CRISPR RNA-seq, K562
     
PRPF39 
PRPF39, CRISPR RNA-seq, HepG2
     
PRR3   
PRR3, RNA Bind-n-Seq, cell-free sample
   
PSMA1 
PSMA1, CRISPR RNA-seq, K562
     
PTBP3   
PTBP3, RNA Bind-n-Seq, cell-free sample
   
RALYL   
RALYL, RNA Bind-n-Seq, cell-free sample
   
RBFOX3   
RBFOX3, RNA Bind-n-Seq, cell-free sample
   
RBM15B   
RBM15B, RNA Bind-n-Seq, cell-free sample
   
RBM20   
RBM20, RNA Bind-n-Seq, cell-free sample
   
RBM23   
RBM23, RNA Bind-n-Seq, cell-free sample
   
RBM24   
RBM24, RNA Bind-n-Seq, cell-free sample
   
RBM27 
RBM27, shRNA RNA-seq, HepG2
     
RBM4   
RBM4, RNA Bind-n-Seq, cell-free sample
   
RBM41   
RBM41, RNA Bind-n-Seq, cell-free sample
   
RBM45   
RBM45, RNA Bind-n-Seq, cell-free sample
   
RBM4B   
RBM4B, RNA Bind-n-Seq, cell-free sample
   
RBM6   
RBM6, RNA Bind-n-Seq, cell-free sample
   
RBMS2   
RBMS2, RNA Bind-n-Seq, cell-free sample
   
RBMS3   
RBMS3, RNA Bind-n-Seq, cell-free sample
   
RC3H1   
RC3H1, RNA Bind-n-Seq, cell-free sample
   
RPS2 
RPS2, shRNA RNA-seq, HepG2
     
RPS25 
RPS25, CRISPR RNA-seq, HepG2
     
RPS5 
RPS5, shRNA RNA-seq, HepG2
     
RPS6 
RPS6, CRISPR RNA-seq, K562
     
SART1 
SART1, CRISPR RNA-seq, K562
     
SF3A2 
SF3A2, CRISPR RNA-seq, K562
     
SF3B6   
SF3B6, RNA Bind-n-Seq, cell-free sample
   
SNRPA   
SNRPA, RNA Bind-n-Seq, cell-free sample
   
SNRPB2   
SNRPB2, RNA Bind-n-Seq, cell-free sample
   
SRSF10   
SRSF10, RNA Bind-n-Seq, cell-free sample
   
SRSF11   
SRSF11, RNA Bind-n-Seq, cell-free sample
   
SRSF2   
SRSF2, RNA Bind-n-Seq, cell-free sample
   
SRSF8   
SRSF8, RNA Bind-n-Seq, cell-free sample
   
TDRD10   
TDRD10, RNA Bind-n-Seq, cell-free sample
   
TRA2B   
TRA2B, RNA Bind-n-Seq, cell-free sample
   
TRIP6 
TRIP6, shRNA RNA-seq, K562
     
UNK   
UNK, RNA Bind-n-Seq, cell-free sample
   
ZC3H10   
ZC3H10, RNA Bind-n-Seq, cell-free sample
   
ZC3H18   
ZC3H18, RNA Bind-n-Seq, cell-free sample
   
ZCRB1   
ZCRB1, RNA Bind-n-Seq, cell-free sample
   
ZFP36   
ZFP36, RNA Bind-n-Seq, cell-free sample
   
ZFP36L1   
ZFP36L1, RNA Bind-n-Seq, cell-free sample
   
ZFP36L2   
ZFP36L2, RNA Bind-n-Seq, cell-free sample
   
ZNF326   
ZNF326, RNA Bind-n-Seq, cell-free sample
   
ZNF335 
ZNF335, CRISPR RNA-seq, K562