ENCODE
Home
Data
Functional Genomics data
Experiment search
Experiment matrix
ChIP-seq matrix
Human and mouse body maps
Functional genomics series
Single-cell experiments
Functional Characterization data
Experiment search
Experiment matrix
Cloud Resources
AWS Open Data
Azure Open Datasets
Collections
RNA-protein interactions (ENCORE)
Epigenomes from four individuals (ENTEx)
Rush Alzheimer’s disease study
Stem cell differentiation
Deeply profiled cell lines
Human donor matrix
Immune cells
Human reference epigenomes
Mouse reference epigenomes
Mouse development matrix
Protein knockdown (Degron)
Search by region
Publications
RNA-Get (gene expression)
Encyclopedia
About
Visualize (SCREEN)
Encyclopedia browser
Search
Methods
Materials & Methods
Antibodies
Genome references
Assays and standards
Glossary
File formats
Software tools
Pipelines
Data organization
Release policy
Schemas
Help
Using the portal
Cart
REST API
Citing ENCODE
FAQ
Project Overview
Collaborations
ENCODE workshops
About the DCC
Sign in / Create account
Listed carts
Search
Deeply Profiled Cell Lines
Cell line samples that were deeply profiled using a set of diverse biochemical approaches.
All
Uniform batch growth
Showing 167 results
List
Report
Download
Visualize
{ ; }
Loading
Assay type
Assay title
Status
Perturbation
Target category
Target of assay
Organism
Biosample classification
Biosample
Organ
Cell
Systems
Life stage
Sex
Hide control experiments
Biosample treatment
Project
RFA
Genome assembly
Available file types
Platform
Run type
Read length (nt)
Mapped read length (nt)
Library fragment size (nt)
Library material
Lab
Replication type
Cellular component
Library construction platform
Library construction method
Audit category:
Audit category:
replicates.library.biosample.biosample_ontology.term_id
EFO:0002106
EFO:0006711
EFO:0002847
EFO:0002074
EFO:0001200
EFO:0009747
EFO:0002824
CL:0002327
CL:0002618
EFO:0002784
EFO:0001196
EFO:0001187
EFO:0002067
EFO:0001099
EFO:0002819
EFO:0009318
EFO:0001086
EFO:0007950
EFO:0003045
EFO:0003042
All
replicates.library.biosample.internal_tags
Deeply Profiled
Assay
Cell Line (batch identifier)
intact Hi-C
PRO-cap
ATAC-seq
DNase-seq
ChIA-PET
Bru-seq
BruChase-seq
BruUV-seq
long read RNA-seq
microRNA-seq
total RNA-seq
snATAC-seq
A673
1
1
1
2
2
2
1
1
1
1
1
ENCBS564CLS
1
1
2
2
2
1
1
1
1
ENCBS826LEP
1
1
1
2
2
1
1
1
1
1
Caco-2
1
1
1
2
2
2
1
1
1
1
1
ENCBS095ZZD
1
1
1
2
2
2
1
1
1
1
ENCBS072CVQ
1
1
2
2
1
1
1
1
1
Calu3
1
1
1
1
2
2
1
1
1
1
1
ENCBS992CLK
1
1
1
1
2
2
1
1
1
1
ENCBS961PLX
1
1
2
2
1
1
1
1
1
GM12878
1
1
2
2
1
1
1
1
1
ENCBS978MLY
1
1
2
2
1
1
1
1
1
ENCBS110BUW
1
2
2
1
HCT116
1
1
2
2
1
1
1
1
1
ENCBS831RKD
1
1
2
2
1
1
1
1
1
ENCBS851BDM
1
2
2
1
HepG2
1
1
2
2
1
1
1
1
1
ENCBS193JTP
1
1
2
2
1
1
1
1
1
ENCBS041EUO
1
2
2
1
IMR-90
1
1
2
2
1
1
1
1
1
ENCBS611WWO
1
1
2
2
1
1
1
1
ENCBS597AKG
1
2
2
1
1
K562
1
1
2
2
1
1
1
1
1
ENCBS327ZDR
1
1
2
2
1
1
1
1
ENCBS708GCD
1
2
2
1
1
MCF 10A
1
1
2
2
1
1
1
1
1
ENCBS401NZE
1
1
2
2
1
1
1
1
ENCBS967KPZ
1
2
2
1
1
1
1
1
OCI-LY7
1
2
2
2
1
1
1
1
1
ENCBS149SHY
1
1
2
2
1
1
1
1
1
ENCBS928AXI
1
2
2
1
1
1
1
PC-3
1
1
2
2
2
1
1
1
1
1
ENCBS388XJL
1
1
2
2
1
1
1
1
1
ENCBS533AYC
1
1
2
2
1
ENCBS042UWP
1
PC-9
1
1
2
2
2
1
1
1
1
1
ENCBS739NKR
1
1
2
2
2
1
1
1
1
ENCBS364OBG
1
1
2
2
1
1
1
1
1
endothelial cell of umbilical vein
1
1
2
2
1
1
1
1
1
ENCBS269GQI
1
2
2
1
1
1
1
1
ENCBS066FEH
1
2
2
1
1
1
1
mammary epithelial cell
1
1
1
2
2
1
1
1
1
ENCBS956YQM
1
1
2
2
1
1
1
1
ENCBS110HEL
1
2
2
1
1
1
1