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Deeply Profiled Cell Lines
Cell line samples that were deeply profiled using a set of diverse biochemical approaches.
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Uniform batch growth
Showing 3327 results
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Assay type
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released
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Audit category:
Audit category:
Audit category:
replicates.library.biosample.biosample_ontology.term_id
CL:0002327
CL:0002618
EFO:0001086
EFO:0001099
EFO:0001187
EFO:0001196
EFO:0001200
EFO:0001203
EFO:0002074
EFO:0002106
EFO:0002819
EFO:0002824
EFO:0002847
EFO:0003042
EFO:0003045
EFO:0006711
EFO:0007950
EFO:0009318
EFO:0009747
All
Assay
Cell Line (batch identifier)
intact Hi-C
PRO-cap
in situ Hi-C
dilution Hi-C
Histone ChIP-seq
Mint-ChIP-seq
TF ChIP-seq
RIP-chip
eCLIP
ATAC-seq
DNase-seq
FAIRE-seq
5C
ChIA-PET
Bru-seq
BruChase-seq
BruUV-seq
CAGE
CRISPR RNA-seq
PAS-seq
PRO-seq
RAMPAGE
RNA microarray
RNA-PET
long read RNA-seq
microRNA counts
microRNA-seq
polyA minus RNA-seq
polyA plus RNA-seq
shRNA RNA-seq
siRNA RNA-seq
small RNA-seq
total RNA-seq
DNAme array
RRBS
WGBS
Repli-chip
Repli-seq
genotyping array
snATAC-seq
WGS
icSHAPE
MS-MS
A549
6
86
254
6
13
1
2
3
2
2
3
1
26
9
11
2
1
1
2
2
2
1
ENCBS423ENC
26
1
1
ENCBS863VVH
23
1
2
ENCBS448ENC
2
3
2
8
A673
1
1
6
2
2
2
2
2
1
1
1
1
1
ENCBS564CLS
1
1
2
2
2
1
1
1
1
ENCBS826LEP
1
1
1
2
2
1
1
1
1
1
ENCBS385OLC
6
2
Caco-2
1
1
5
6
2
3
1
2
2
2
1
1
1
1
1
1
1
1
1
ENCBS095ZZD
1
1
1
2
2
2
1
1
1
1
ENCBS072CVQ
1
1
2
2
1
1
1
1
1
ENCBS257JWV
6
Calu3
1
1
6
1
1
1
2
2
1
1
1
1
1
ENCBS992CLK
1
1
1
1
2
2
1
1
1
1
ENCBS961PLX
1
1
2
2
1
1
1
1
1
ENCBS827USO
6
GM23338
11
6
16
1
2
1
1
1
2
1
1
2
1
2
ENCBS368AAA
11
8
1
1
1
1
1
1
1
ENCBS373AAA
11
7
1
1
1
1
1
1
1
1
ENCBS155WDP
5
1
1
1
1
1
H1
51
77
1
3
1
1
3
4
1
1
7
1
4
3
9
4
4
2
1
2
1
1
2
ENCBS111ENC
33
1
2
1
1
1
ENCBS854AAA
17
ENCBS380OBH
13
H9
33
18
1
7
1
1
1
1
1
1
1
1
ENCBS808UWK
19
ENCBS532LWE
15
ENCBS654ADT
6
1
1
1
1
HCT116
17
14
8
17
92
43
17
16
33
18
2
1
16
1
1
1
2
1
17
2
1
7
ENCBS389ENC
19
1
ENCBS177ZJV
1
1
6
1
1
1
2
1
1
1
ENCBS228RKP
1
1
6
1
1
1
2
1
1
1
HFFc6
6
1
1
1
1
6
ENCBS252IDB
1
1
6
ENCBS508JLR
1
1
6
ENCBS249LEB
1
1
5
HepG2
1
1
15
825
2
105
2
2
1
1
4
2
2
1
6
187
6
2
3
1
2
3
11
232
3
6
3
2
2
6
2
3
3
1
ENCBS114ENC
40
2
1
1
ENCBS638AAA
1
26
1
1
ENCBS308ZPA
25
IMR-90
1
1
1
30
16
1
2
2
2
2
1
3
3
1
2
3
9
3
2
1
2
1
6
2
1
ENCBS370ENC
3
3
3
9
1
ENCBS373ENC
3
3
3
9
1
ENCBS007TVF
16
MCF 10A
1
1
6
13
3
2
2
2
1
1
1
1
3
2
3
1
ENCBS401NZE
1
1
2
2
1
1
1
1
ENCBS967KPZ
1
2
2
1
1
1
1
1
ENCBS067ENC
4
1
1
1
MCF-7
1
18
152
1
7
3
1
4
2
2
1
3
4
3
1
1
2
1
4
1
7
1
2
5
6
2
3
ENCBS056AAA
19
ENCBS789UPK
13
1
ENCBS967MVZ
13
1
OCI-LY7
1
10
2
1
2
2
2
1
1
1
1
1
2
1
1
1
1
ENCBS149SHY
1
1
2
2
1
1
1
1
1
ENCBS928AXI
1
2
2
1
1
1
1
ENCBS699NWP
5
2
PC-3
1
13
3
1
1
2
2
2
1
1
1
1
2
1
ENCBS596CTT
13
3
ENCBS451OVM
12
2
ENCBS388XJL
1
1
2
2
1
1
1
1
1
PC-9
1
13
3
2
2
2
2
1
1
1
1
1
ENCBS177ANS
13
3
ENCBS987JQH
13
3
ENCBS739NKR
1
1
2
2
2
1
1
1
1
WTC11
6
90
2
1
6
1
1
7
1
10
ENCBS448BXM
15
ENCBS474NOC
1
7
1
2
ENCBS593PKA
1
7
1
2
endothelial cell of umbilical vein
1
1
1
1
16
13
2
1
2
2
2
1
5
1
2
1
1
1
3
5
1
1
1
6
1
1
ENCBS717AAA
12
2
ENCBS269GQI
1
2
2
1
1
1
1
1
ENCBS066FEH
1
2
2
1
1
1
1
mammary epithelial cell
1
2
1
19
3
3
1
2
2
1
1
1
1
3
1
2
1
2
3
1
1
2
ENCBS091ENC
12
2
1
1
ENCBS045GHW
11
2
ENCBS956YQM
1
1
2
2
1
1
1
1