Summary for ENCSR820QMS
doi:10.17989/ENCSR820QMS
Summary
- Status
- released
- Description
- Reference epigenome for human H1-hESC cell line
- Donor diversity
- single
- Assay
- ChIP-seq, polyA plus RNA-seq, RNA-seq, small RNA-seq, whole-genome shotgun bisulfite sequencing, microRNA-seq, DNase-seq
- Target
- POLR2AphosphoS5, H3K4me1, H3K27ac, H3K36me3, H3K9me3, H3K27me3, EP300, POLR2A, H3K4me3, CTCF
- Biosample summary
- Homo sapiens H1
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR820QMS
Experiments
16 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR000ANB | ChIP-seq | H3K36me3 | Homo sapiens H1 | Bradley Bernstein, Broad | released | |
| ENCSR617FKV | whole-genome shotgun bisulfite sequencing | Homo sapiens H1 | Richard Myers, HAIB | released | ||
| ENCSR000EMU | DNase-seq | Homo sapiens H1 | John Stamatoyannopoulos, UW | released | ||
| ENCSR000ALU | ChIP-seq | H3K27me3 | Homo sapiens H1 | Bradley Bernstein, Broad | released | |
| ENCSR000APZ | ChIP-seq | H3K9me3 | Homo sapiens H1 | Bradley Bernstein, Broad | released | |
| ENCSR000BNH | ChIP-seq | CTCF | Homo sapiens H1 | Richard Myers, HAIB | released | |
| ENCSR000COU | polyA plus RNA-seq | Homo sapiens H1 | Thomas Gingeras, CSHL | released | ||
| ENCSR000BHN | ChIP-seq | POLR2A | Homo sapiens H1 | Richard Myers, HAIB | released | |
| ENCSR000CRJ | small RNA-seq | Homo sapiens H1 | Thomas Gingeras, CSHL | released | ||
| ENCSR814XPE | ChIP-seq | H3K4me3 | Homo sapiens H1 | Bradley Bernstein, Broad | released | |
| ENCSR000BIC | ChIP-seq | POLR2AphosphoS5 | Homo sapiens H1 | Richard Myers, HAIB | released | |
| ENCSR000ANA | ChIP-seq | H3K4me1 | Homo sapiens H1 | Bradley Bernstein, Broad | released | |
| ENCSR000BKK | ChIP-seq | EP300 | Homo sapiens H1 | Richard Myers, HAIB | released | |
| ENCSR000ANP | ChIP-seq | H3K27ac | Homo sapiens H1 | Bradley Bernstein, Broad | released | |
| ENCSR895ZTB | RNA-seq | Homo sapiens H1 | Barbara Wold, Caltech | released | ||
| ENCSR588ZRK | microRNA-seq | Homo sapiens H1 | Ali Mortazavi, UCI | released |
Control experiments
2 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR000AMI | input library | Homo sapiens H1 | Bradley Bernstein, Broad | released | |
| ENCSR000BHL | input library | Homo sapiens H1 | Richard Myers, HAIB | released |