Stem cell differentiation – ENCODE

H1 Stem Cells

Data generated for cell types differentiated from the H1 human embryonic stem cell line.

Endoderm

Mesoderm

Ectoderm

Stem

Mesoderm + Endoderm

Assay

Biosample

	Histone and Mint ChIP-seq Histone and Mint ChIP-seq														TF ChIP-seq TF ChIP-seq
	H2AFZ target for Histone and Mint ChIP-seq Assay	H3K27ac target for Histone and Mint ChIP-seq Assay	H3K27me3 target for Histone and Mint ChIP-seq Assay	H3K36me3 target for Histone and Mint ChIP-seq Assay	H3K4me1 target for Histone and Mint ChIP-seq Assay	H3K4me2 target for Histone and Mint ChIP-seq Assay	H3K4me3 target for Histone and Mint ChIP-seq Assay	H3K79me2 target for Histone and Mint ChIP-seq Assay	H3K9ac target for Histone and Mint ChIP-seq Assay	H3K9me3 target for Histone and Mint ChIP-seq Assay	H4K20me1 target for Histone and Mint ChIP-seq Assay	H3F3A target for Histone and Mint ChIP-seq Assay	H3K9me2 target for Histone and Mint ChIP-seq Assay	Repli-chip Assay	CTCF target for TF ChIP-seq Assay	EZH2 target for TF ChIP-seq Assay	EZH2phosphoT487 target for TF ChIP-seq Assay	DNase-seq Assay	DNAme array Assay	RAMPAGE Assay	WGBS Assay	microRNA counts Assay	microRNA-seq Assay	small RNA-seq Assay	total RNA-seq Assay	polyA plus RNA-seq Assay	genotyping array Assay
in vitro differentiated cells
smooth muscle cell Biosample	Search in vitro differentiated cells, smooth muscle cell for Histone ChIP-seq, H2AFZ	Search in vitro differentiated cells, smooth muscle cell for Histone ChIP-seq, H3K27ac	Search in vitro differentiated cells, smooth muscle cell for Histone ChIP-seq, H3K27me3	Search in vitro differentiated cells, smooth muscle cell for Histone ChIP-seq, H3K36me3	Search in vitro differentiated cells, smooth muscle cell for Histone ChIP-seq, H3K4me1	Search in vitro differentiated cells, smooth muscle cell for Histone ChIP-seq, H3K4me2	Search in vitro differentiated cells, smooth muscle cell for Histone ChIP-seq, H3K4me3	Search in vitro differentiated cells, smooth muscle cell for Histone ChIP-seq, H3K79me2	Search in vitro differentiated cells, smooth muscle cell for Histone ChIP-seq, H3K9ac	Search in vitro differentiated cells, smooth muscle cell for Histone ChIP-seq, H3K9me3	Search in vitro differentiated cells, smooth muscle cell for Histone ChIP-seq, H4K20me1	Search in vitro differentiated cells, smooth muscle cell for Histone ChIP-seq, H3F3A		Search in vitro differentiated cells, smooth muscle cell for Repli-chip	Search in vitro differentiated cells, smooth muscle cell for TF ChIP-seq, CTCF			Search in vitro differentiated cells, smooth muscle cell for DNase-seq	Search in vitro differentiated cells, smooth muscle cell for DNAme array	Search in vitro differentiated cells, smooth muscle cell for RAMPAGE	Search in vitro differentiated cells, smooth muscle cell for WGBS	Search in vitro differentiated cells, smooth muscle cell for microRNA counts	Search in vitro differentiated cells, smooth muscle cell for microRNA-seq	Search in vitro differentiated cells, smooth muscle cell for small RNA-seq	Search in vitro differentiated cells, smooth muscle cell for total RNA-seq	Search in vitro differentiated cells, smooth muscle cell for polyA plus RNA-seq	Search in vitro differentiated cells, smooth muscle cell for genotyping array
hepatocyte Biosample	Search in vitro differentiated cells, hepatocyte for Histone ChIP-seq, H2AFZ	Search in vitro differentiated cells, hepatocyte for Histone ChIP-seq, H3K27ac	Search in vitro differentiated cells, hepatocyte for Histone ChIP-seq, H3K27me3	Search in vitro differentiated cells, hepatocyte for Histone ChIP-seq, H3K36me3	Search in vitro differentiated cells, hepatocyte for Histone ChIP-seq, H3K4me1	Search in vitro differentiated cells, hepatocyte for Histone ChIP-seq, H3K4me2	Search in vitro differentiated cells, hepatocyte for Histone ChIP-seq, H3K4me3	Search in vitro differentiated cells, hepatocyte for Histone ChIP-seq, H3K79me2	Search in vitro differentiated cells, hepatocyte for Histone ChIP-seq, H3K9ac	Search in vitro differentiated cells, hepatocyte for Histone ChIP-seq, H3K9me3	Search in vitro differentiated cells, hepatocyte for Histone ChIP-seq, H4K20me1		Search in vitro differentiated cells, hepatocyte for Histone ChIP-seq, H3K9me2		Search in vitro differentiated cells, hepatocyte for TF ChIP-seq, CTCF	Search in vitro differentiated cells, hepatocyte for TF ChIP-seq, EZH2	Search in vitro differentiated cells, hepatocyte for TF ChIP-seq, EZH2phosphoT487	Search in vitro differentiated cells, hepatocyte for DNase-seq	Search in vitro differentiated cells, hepatocyte for DNAme array	Search in vitro differentiated cells, hepatocyte for RAMPAGE	Search in vitro differentiated cells, hepatocyte for WGBS	Search in vitro differentiated cells, hepatocyte for microRNA counts	Search in vitro differentiated cells, hepatocyte for microRNA-seq	Search in vitro differentiated cells, hepatocyte for small RNA-seq	Search in vitro differentiated cells, hepatocyte for total RNA-seq	Search in vitro differentiated cells, hepatocyte for polyA plus RNA-seq
neural progenitor cell Biosample	Search in vitro differentiated cells, neural progenitor cell for Histone ChIP-seq, H2AFZ	Search in vitro differentiated cells, neural progenitor cell for Histone ChIP-seq, H3K27ac	Search in vitro differentiated cells, neural progenitor cell for Histone ChIP-seq, H3K27me3	Search in vitro differentiated cells, neural progenitor cell for Histone ChIP-seq, H3K36me3	Search in vitro differentiated cells, neural progenitor cell for Histone ChIP-seq, H3K4me1	Search in vitro differentiated cells, neural progenitor cell for Histone ChIP-seq, H3K4me2	Search in vitro differentiated cells, neural progenitor cell for Histone ChIP-seq, H3K4me3	Search in vitro differentiated cells, neural progenitor cell for Histone ChIP-seq, H3K79me2	Search in vitro differentiated cells, neural progenitor cell for Histone ChIP-seq, H3K9ac	Search in vitro differentiated cells, neural progenitor cell for Histone ChIP-seq, H3K9me3	Search in vitro differentiated cells, neural progenitor cell for Histone ChIP-seq, H4K20me1	Search in vitro differentiated cells, neural progenitor cell for Histone ChIP-seq, H3F3A		Search in vitro differentiated cells, neural progenitor cell for Repli-chip	Search in vitro differentiated cells, neural progenitor cell for TF ChIP-seq, CTCF	Search in vitro differentiated cells, neural progenitor cell for TF ChIP-seq, EZH2	Search in vitro differentiated cells, neural progenitor cell for TF ChIP-seq, EZH2phosphoT487	Search in vitro differentiated cells, neural progenitor cell for DNase-seq	Search in vitro differentiated cells, neural progenitor cell for DNAme array	Search in vitro differentiated cells, neural progenitor cell for RAMPAGE		Search in vitro differentiated cells, neural progenitor cell for microRNA counts	Search in vitro differentiated cells, neural progenitor cell for microRNA-seq	Search in vitro differentiated cells, neural progenitor cell for small RNA-seq	Search in vitro differentiated cells, neural progenitor cell for total RNA-seq
ecto neural progenitor cell Biosample																		Search in vitro differentiated cells, ecto neural progenitor cell for DNase-seq
lateral mesodermal cell Biosample														Search in vitro differentiated cells, lateral mesodermal cell for Repli-chip
mesenchymal stem cell Biosample														Search in vitro differentiated cells, mesenchymal stem cell for Repli-chip
mesothelial cell Biosample														Search in vitro differentiated cells, mesothelial cell for Repli-chip
neural crest cell Biosample														Search in vitro differentiated cells, neural crest cell for Repli-chip
splanchnic mesodermal cell Biosample														Search in vitro differentiated cells, splanchnic mesodermal cell for Repli-chip