- Description
- Using an intuitive interface, you can 1) identify DNaseI-hypersensitive sites (DHS) within a genomic region of interest, 2) predict the target gene for DHS of interest, 3) predict the DHS that regulate a gene of interest, 4) identify clusters of similarly regulated DHS, that may have related function, 5) identify enriched motifs for transcription factors that may bind in these similarly regulated DHS, and 6) identify DHS that contain a DNA sequence motif for a transcription factor of interest. The Regulatory Elements Database provides access to roughly 2.8 million DNaseI-hypersensitive sites and their signal in 112 human samples, as well as Affymetrix microarray expression data for the same cell-types.
- Software type
- database
- Used for
- community resource