1. Software
  2. quality metric + filtering

Irreproducible Discovery Rate (IDR)

Status
released
Description
Measures consistency between replicates in high-throughput experiments. Also uses reproducibility in score rankings between peaks in each replicate to determine an optimal cutoff for significance. The core IDR R package can be downloaded from the IDR download page: http://cran.r-project.org/web/packages/idr/index.html
Software type
quality metric, filtering
Used for
data QC, ChIP-seq, DNase-seq, RNA-seq

Software versions

Version
Download checksum
2.0.03b8d781596f475044a484d0e46e8b4bb44c44712
October 2010
Kevin White lab modified, August 2015
2.0.2
2.0.4.23e827d17b8aedcf9dfcd3039eec688dd