Hotspot
- Status
- released
- Title
- Hotspot
- Description
- Identifies regions of local enrichment, including peaks, in genomic short-read sequence data. Uses the binomial distribution with a local background model to automatically correct for broad-scale regional differences in tag levels. It is applicable to a wide variety of epigenetic profiling assays, including ChIP-seq and DNase-seq. Hotspot forms the basis of the SPOT data quality metric.
- Software type
- peak caller
- Used for
- DNase-seq, ChIP-seq
- Publications
Software versions
Version | Download checksum |
|---|---|
| version 1 release 4.0.0 | |
| 4.1.1 | 2a89974f032fbb6cd75639375f2b9147 |