Hotspot

Status
released
Title
Hotspot
Description
Identifies regions of local enrichment, including peaks, in genomic short-read sequence data. Uses the binomial distribution with a local background model to automatically correct for broad-scale regional differences in tag levels. It is applicable to a wide variety of epigenetic profiling assays, including ChIP-seq and DNase-seq. Hotspot forms the basis of the SPOT data quality metric.
Software type
peak caller
Used for
DNase-seq, ChIP-seq

Software versions

Version
Download checksum
version 1 release 4.0.0
4.1.12a89974f032fbb6cd75639375f2b9147