GEM

Status
released
Title
GEM
Description
GEM is a Java software package for analyzing genome wide ChIP-seq/ChIP-exo data. GEM can decompose single observed peaks into multiple binding events, determine binding event location at high spatial resolution, and discover explanatory DNA sequence motifs with an integrated model of ChIP reads and proximal DNA sequences. GEM is able to process single-end or paired-end data and can be run in single-condition mode or multi-condition mode. GEM will be used in the ENCODE 3 uniform peak calling pipeline.
Software type
peak caller
Used for
ChIP-seq

Software versions

Version
Download checksum
2.4.1