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Functional genomics series

  • OrganismDevelopmentSeries
    Organism development
  • TreatmentTimeSeries
    Treatment time
  • TreatmentConcentrationSeries
    Treatment concentration
  • ReplicationTimingSeries
    Replication timing
  • GeneSilencingSeries
    Gene silencing
Assay name
  • ChIP-seq
    49
    Do not include items with this term
  • RNA-seq
    35
    Do not include items with this term
  • polyA plus RNA-seq
    20
    Do not include items with this term
  • ATAC-seq
    12
    Do not include items with this term
  • whole-genome shotgun bisulfite sequencing
    8
    Do not include items with this term
  • DNase-seq
    7
    Do not include items with this term
  • CAGE
    1
    Do not include items with this term
  • MRE-seq
    1
    Do not include items with this term
  • small RNA-seq
    1
    Do not include items with this term
  • transcription profiling by array assay
    1
    Do not include items with this term
Status
  • released
    135
    Do not include items with this term
Genome assembly
  • mm10
    95
    Do not include items with this term
  • hg19
    4
    Do not include items with this term
  • GRCh38
    3
    Do not include items with this term
Organism
  • Mus musculus
    95
    Do not include items with this term
  • Caenorhabditis elegans
    35
    Do not include items with this term
  • Homo sapiens
    5
    Do not include items with this term
Target category
  • histone
    49
    Do not include items with this term
  • broad histone mark
    33
    Do not include items with this term
  • transcription factor
    29
    Do not include items with this term
  • narrow histone mark
    16
    Do not include items with this term
  • other context
    3
    Do not include items with this term
  • cofactor
    2
    Do not include items with this term
Target of assay
  • H3K4me1
    9
    Do not include items with this term
  • H3K27ac
    8
    Do not include items with this term
  • H3K27me3
    8
    Do not include items with this term
  • H3K36me3
    8
    Do not include items with this term
  • H3K4me3
    8
    Do not include items with this term
  • H3K9me3
    8
    Do not include items with this term
  • C08G9.2
    1
    Do not include items with this term
  • Y22D7AL.16
    1
    Do not include items with this term
  • blmp-1
    1
    Do not include items with this term
  • ceh-14
    1
    Do not include items with this term
  • ceh-18
    1
    Do not include items with this term
  • ceh-2
    1
    Do not include items with this term
  • ceh-24
    1
    Do not include items with this term
  • ceh-30
    1
    Do not include items with this term
  • ceh-31
    1
    Do not include items with this term
  • ceh-9
    1
    Do not include items with this term
  • ces-1
    1
    Do not include items with this term
  • dve-1
    1
    Do not include items with this term
  • elt-4
    1
    Do not include items with this term
  • eyg-1
    1
    Do not include items with this term
  • fax-1
    1
    Do not include items with this term
  • fkh-10
    1
    Do not include items with this term
  • fkh-6
    1
    Do not include items with this term
  • gmeb-2
    1
    Do not include items with this term
  • ham-2
    1
    Do not include items with this term
  • hlh-15
    1
    Do not include items with this term
  • lim-6
    1
    Do not include items with this term
  • lin-11
    1
    Do not include items with this term
  • mab-5
    1
    Do not include items with this term
  • mec-3
    1
    Do not include items with this term
  • pag-3
    1
    Do not include items with this term
  • pqm-1
    1
    Do not include items with this term
  • rnt-1
    1
    Do not include items with this term
  • sox-4
    1
    Do not include items with this term
  • tbx-7
    1
    Do not include items with this term
  • ttx-3
    1
    Do not include items with this term
  • unc-3
    1
    Do not include items with this term
  • unc-42
    1
    Do not include items with this term
  • unc-86
    1
    Do not include items with this term
  • zip-5
    1
    Do not include items with this term
Biosample classification
  • tissue
    96
    Do not include items with this term
  • whole organisms
    35
    Do not include items with this term
  • cell line
    2
    Do not include items with this term
  • primary cell
    2
    Do not include items with this term
Biosample term name
  • whole organism
    35
    Do not include items with this term
  • liver
    12
    Do not include items with this term
  • forebrain
    10
    Do not include items with this term
  • hindbrain
    10
    Do not include items with this term
  • midbrain
    10
    Do not include items with this term
  • heart
    9
    Do not include items with this term
  • kidney
    9
    Do not include items with this term
  • lung
    9
    Do not include items with this term
  • stomach
    9
    Do not include items with this term
  • limb
    5
    Do not include items with this term
  • embryonic facial prominence
    3
    Do not include items with this term
  • AG08395
    2
    Do not include items with this term
  • AG08396
    2
    Do not include items with this term
  • AG08470
    2
    Do not include items with this term
  • AG20443
    2
    Do not include items with this term
  • intestine
    2
    Do not include items with this term
  • melanocyte of skin
    2
    Do not include items with this term
  • neural tube
    2
    Do not include items with this term
  • GM03348
    1
    Do not include items with this term
  • adrenal gland
    1
    Do not include items with this term
  • embryo
    1
    Do not include items with this term
  • skeletal muscle tissue
    1
    Do not include items with this term
  • spleen
    1
    Do not include items with this term
  • thymus
    1
    Do not include items with this term
  • urinary bladder
    1
    Do not include items with this term
Organ
  • brain
    30
    Do not include items with this term
  • endocrine gland
    14
    Do not include items with this term
  • exocrine gland
    12
    Do not include items with this term
  • liver
    12
    Do not include items with this term
  • lung
    11
    Do not include items with this term
  • heart
    9
    Do not include items with this term
  • kidney
    9
    Do not include items with this term
  • stomach
    9
    Do not include items with this term
  • embryo
    6
    Do not include items with this term
  • limb
    5
    Do not include items with this term
  • skin of body
    4
    Do not include items with this term
  • connective tissue
    2
    Do not include items with this term
  • epithelium
    2
    Do not include items with this term
  • immune organ
    2
    Do not include items with this term
  • intestine
    2
    Do not include items with this term
  • adrenal gland
    1
    Do not include items with this term
  • musculature of body
    1
    Do not include items with this term
  • spleen
    1
    Do not include items with this term
  • thymus
    1
    Do not include items with this term
  • urinary bladder
    1
    Do not include items with this term
Cell
  • fibroblast
    2
    Do not include items with this term
  • melanocyte
    2
    Do not include items with this term
Life stage
  • embryonic
    91
    Do not include items with this term
  • postnatal
    72
    Do not include items with this term
  • unknown
    36
    Do not include items with this term
  • adult
    23
    Do not include items with this term
  • child
    4
    Do not include items with this term
Biosample age
  • 14.5 days
    89
    Do not include items with this term
  • 15.5 days
    83
    Do not include items with this term
  • 16.5 days
    75
    Do not include items with this term
  • 0 days
    72
    Do not include items with this term
  • 11.5 days
    59
    Do not include items with this term
  • 13.5 days
    54
    Do not include items with this term
  • 50 minutes
    34
    Do not include items with this term
  • 80 minutes
    34
    Do not include items with this term
  • 650 minutes
    32
    Do not include items with this term
  • 680 minutes
    32
    Do not include items with this term
  • 8 weeks
    19
    Do not include items with this term
  • 12.5 days
    18
    Do not include items with this term
  • 10.5 days
    14
    Do not include items with this term
  • 850 minutes
    11
    Do not include items with this term
  • 880 minutes
    11
    Do not include items with this term
  • 490 minutes
    9
    Do not include items with this term
  • 520 minutes
    9
    Do not include items with this term
  • 550 minutes
    6
    Do not include items with this term
  • 580 minutes
    6
    Do not include items with this term
  • 450 minutes
    4
    Do not include items with this term
  • 480 minutes
    4
    Do not include items with this term
  • 350 minutes
    3
    Do not include items with this term
  • 380 minutes
    3
    Do not include items with this term
  • 1 year
    2
    Do not include items with this term
  • 10 years
    2
    Do not include items with this term
  • 3 years
    2
    Do not include items with this term
  • 300 minutes
    2
    Do not include items with this term
  • 330 minutes
    2
    Do not include items with this term
  • 52 years
    2
    Do not include items with this term
  • 55 years
    2
    Do not include items with this term
  • 71 years
    2
    Do not include items with this term
  • 85 years
    2
    Do not include items with this term
  • 10 days
    1
    Do not include items with this term
  • 11 days
    1
    Do not include items with this term
  • 11 weeks
    1
    Do not include items with this term
  • 14 days
    1
    Do not include items with this term
  • 18 days
    1
    Do not include items with this term
  • 24 weeks
    1
    Do not include items with this term
  • 250 minutes
    1
    Do not include items with this term
  • 280 minutes
    1
    Do not include items with this term
  • 510 minutes
    1
    Do not include items with this term
  • 540 minutes
    1
    Do not include items with this term
  • 570 minutes
    1
    Do not include items with this term
  • 600 minutes
    1
    Do not include items with this term
  • 630 minutes
    1
    Do not include items with this term
  • 660 minutes
    1
    Do not include items with this term
  • 690 minutes
    1
    Do not include items with this term
  • 720 minutes
    1
    Do not include items with this term
  • 750 minutes
    1
    Do not include items with this term
  • 780 minutes
    1
    Do not include items with this term
  • 810 minutes
    1
    Do not include items with this term
  • 840 minutes
    1
    Do not include items with this term
  • 870 minutes
    1
    Do not include items with this term
  • 9.5 days
    1
    Do not include items with this term
  • 900 minutes
    1
    Do not include items with this term
Lab
  • Bing Ren, UCSD
    61
    Do not include items with this term
  • Robert Waterston, UW
    35
    Do not include items with this term
  • Barbara Wold, Caltech
    19
    Do not include items with this term
  • Joe Ecker, Salk
    8
    Do not include items with this term
  • John Stamatoyannopoulos, UW
    6
    Do not include items with this term
  • Gregory Crawford, Duke
    2
    Do not include items with this term
  • Thomas Gingeras, CSHL
    2
    Do not include items with this term
  • Piero Carninci, RIKEN
    1
    Do not include items with this term
  • Richard Myers, HAIB
    1
    Do not include items with this term
Project
  • ENCODE
    100
    Do not include items with this term
  • modERN
    35
    Do not include items with this term

Showing 25 of 135 results

ListReport
View All
  • Organism development series in midbrain (embryonic)
    Assays: DNase-seq
    Organism: Mus musculus
    Stages: E10.5, E11.5, E14.5
    Lab: John Stamatoyannopoulos, UW
    Project: ENCODE
    Series
    ENCSR072DEA
    released
  • Organism development series in limb (embryonic)
    Assays: DNase-seq
    Organism: Mus musculus
    Stages: E10.5, E11.5, E14.5
    Lab: John Stamatoyannopoulos, UW
    Project: ENCODE
    Series
    ENCSR466MZF
    released
  • Organism development series in hindbrain (embryonic)
    Assays: DNase-seq
    Organism: Mus musculus
    Stages: E10.5, E11.5, E14.5
    Lab: John Stamatoyannopoulos, UW
    Project: ENCODE
    Series
    ENCSR649RBB
    released
  • Organism development series in forebrain (embryonic)
    Assays: DNase-seq
    Organism: Mus musculus
    Stages: E10.5, E11.5, E14.5
    Lab: John Stamatoyannopoulos, UW
    Project: ENCODE
    Series
    ENCSR092GOO
    released
  • Organism development series in embryonic facial prominence (embryonic)
    Assays: DNase-seq
    Organism: Mus musculus
    Stages: E10.5, E11.5, E14.5
    Lab: John Stamatoyannopoulos, UW
    Project: ENCODE
    Series
    ENCSR641QXM
    released
  • Organism development series in embryo (embryonic)
    Assays: DNase-seq
    Organism: Mus musculus
    Stages: E10, E10.5, E11, E9.5
    Lab: John Stamatoyannopoulos, UW
    Project: ENCODE
    Series
    ENCSR950SAY
    released
  • Organism development series in stomach (embryonic)
    Assays: ATAC-seq
    Organism: Mus musculus
    Stages: E14.5, E15.5, E16.5
    Lab: Bing Ren, UCSD
    Project: ENCODE
    Series
    ENCSR627XFQ
    released
  • Organism development series in neural tube (embryonic)
    Assays: ATAC-seq
    Organism: Mus musculus
    Stages: E11.5, E12.5, E13.5, E14.5, E15.5
    Lab: Bing Ren, UCSD
    Project: ENCODE
    Series
    ENCSR868EZR
    released
  • Organism development series in midbrain (embryonic)
    Assays: ATAC-seq
    Organism: Mus musculus
    Stages: E11.5, E12.5, E13.5, E14.5, E15.5, E16.5
    Lab: Bing Ren, UCSD
    Project: ENCODE
    Series
    ENCSR968KJF
    released
  • Organism development series in lung (embryonic)
    Assays: ATAC-seq
    Organism: Mus musculus
    Stages: E14.5, E15.5, E16.5
    Lab: Bing Ren, UCSD
    Project: ENCODE
    Series
    ENCSR762JBN
    released
  • Organism development series in liver (embryonic)
    Assays: ATAC-seq
    Organism: Mus musculus
    Stages: E11.5, E12.5, E13.5, E14.5, E15.5, E16.5
    Lab: Bing Ren, UCSD
    Project: ENCODE
    Series
    ENCSR326DKM
    released
  • Organism development series in limb (embryonic)
    Assays: ATAC-seq
    Organism: Mus musculus
    Stages: E11.5, E12.5, E13.5, E14.5, E15.5
    Lab: Bing Ren, UCSD
    Project: ENCODE
    Series
    ENCSR780UFT
    released
  • Organism development series in kidney (embryonic)
    Assays: ATAC-seq
    Organism: Mus musculus
    Stages: E14.5, E15.5, E16.5
    Lab: Bing Ren, UCSD
    Project: ENCODE
    Series
    ENCSR684EDE
    released
  • Organism development series in intestine (embryonic)
    Assays: ATAC-seq
    Organism: Mus musculus
    Stages: E14.5, E15.5, E16.5
    Lab: Bing Ren, UCSD
    Project: ENCODE
    Series
    ENCSR765FMY
    released
  • Organism development series in hindbrain (embryonic)
    Assays: ATAC-seq
    Organism: Mus musculus
    Stages: E11.5, E12.5, E13.5, E14.5, E15.5, E16.5
    Lab: Bing Ren, UCSD
    Project: ENCODE
    Series
    ENCSR550MIW
    released
  • Organism development series in heart (embryonic)
    Assays: ATAC-seq
    Organism: Mus musculus
    Stages: E11.5, E12.5, E13.5, E14.5, E15.5, E16.5
    Lab: Bing Ren, UCSD
    Project: ENCODE
    Series
    ENCSR028ALM
    released
  • Organism development series in forebrain (embryonic)
    Assays: ATAC-seq
    Organism: Mus musculus
    Stages: E11.5, E12.5, E13.5, E14.5, E15.5, E16.5
    Lab: Bing Ren, UCSD
    Project: ENCODE
    Series
    ENCSR569DNK
    released
  • Organism development series in embryonic facial prominence (embryonic)
    Assays: ATAC-seq
    Organism: Mus musculus
    Stages: E11.5, E12.5, E13.5, E14.5, E15.5
    Lab: Bing Ren, UCSD
    Project: ENCODE
    Series
    ENCSR660CNU
    released
  • Organism development series in limb (embryonic)
    Assays: polyA plus RNA-seq
    Organism: Mus musculus
    Stages: E11.5, E14.5, E13.5, E15.5, E12.5, E10.5
    Lab: Barbara Wold, Caltech
    Project: ENCODE
    Series
    ENCSR902MLV
    released
  • Organism development series in limb (embryonic)
    Assays: polyA plus RNA-seq
    Organism: Mus musculus
    Stages: E11.5, E14.5, E13.5, E15.5, E12.5, E10.5
    Lab: Barbara Wold, Caltech
    Project: ENCODE
    Series
    ENCSR407MLM
    released
  • Organism development series in spleen (postnatal, 0)
    Assays: polyA plus RNA-seq
    Organism: Mus musculus
    Stages: P0
    Lab: Barbara Wold, Caltech
    Project: ENCODE
    Series
    ENCSR659DPY
    released
  • Organism development series in urinary bladder (postnatal, 0)
    Assays: polyA plus RNA-seq
    Organism: Mus musculus
    Stages: P0
    Lab: Barbara Wold, Caltech
    Project: ENCODE
    Series
    ENCSR708IXO
    released
  • Organism development series in adrenal gland (postnatal, 0)
    Assays: polyA plus RNA-seq
    Organism: Mus musculus
    Stages: P0
    Lab: Barbara Wold, Caltech
    Project: ENCODE
    Series
    ENCSR363WPW
    released
  • Organism development series in embryonic facial prominence (embryonic)
    Assays: polyA plus RNA-seq
    Organism: Mus musculus
    Stages: E10.5, E11.5, E12.5, E13.5, E14.5, E15.5
    Lab: Barbara Wold, Caltech
    Project: ENCODE
    Series
    ENCSR617YDQ
    released
  • Organism development series in limb (embryonic)
    Assays: polyA plus RNA-seq
    Organism: Mus musculus
    Stages: E10.5, E11.5, E12.5, E13.5, E14.5, E15.5
    Lab: Barbara Wold, Caltech
    Project: ENCODE
    Series
    ENCSR098WGB
    released
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