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Clear Filters
Assay
4
ChIP-seq
4
DNase-seq
3
RNA-seq
3
whole-genome shotgun bisulfite sequencing
2
microRNA counts
2
microRNA-seq
1
RRBS
Series status
3
released
1
archived
Genome assembly (visualization)
4
GRCh38
4
hg19
Organism
4
Homo sapiens
Target of assay
4
broad histone mark
4
control
4
histone
4
histone modification
4
narrow histone mark
Biosample type
2
primary cell
1
in vitro differentiated cells
1
stem cell
Organ
2
connective tissue
2
skin of body
1
liver
1
penis
Life stage
2
adult
2
embryonic
1
postnatal
1
unknown
Available data
4
bam
4
bed bedMethyl
4
bed broadPeak
4
bed narrowPeak
4
bigBed bedMethyl
4
bigBed broadPeak
4
bigBed narrowPeak
4
bigWig
4
fastq
3
tsv
2
bed bed6+
2
bigBed bed6+
2
rcc
1
bed bedRnaElements
1
bigBed bedRnaElements
1
gtf
1
tagAlign
Read length
4
36
4
76
3
150
3
25
2
101
2
50
1
125
1
30
1
74
Mapped read length
148
36
41
50
6
30
4
76
2
32
2
47
2
51
1
28
1
37
1
74
Library insert size (nt)
4
200-600
3
<200
3
>200
2
<30
1
300-600
1
300-800
Library made from
4
DNA
3
RNA
2
miRNA
1
polyadenylated mRNA
Library depleted in
3
rRNA
Date released
3
August, 2016
1
July, 2013
Lab
3
ENCODE Consortium
1
Anshul Kundaje, Stanford
Project
3
ENCODE
1
Roadmap
RFA
3
ENCODE3
1
Roadmap
Audit category:
2
partial reference epigenome
1
multiple biosample term names in reference epigenome
Showing 4 of 4 results
table-tab-icon
Series
ENCSR300AUZ
released
Audit warning
1
Reference epigenome series
in fibroblast of arm
(
Homo sapiens
, adult, 53 year
)
Targets:
H3K27me3, H3K4me1, H3K36me3, H3K27ac, Control, H3K4me3
Lab:
ENCODE Consortium
Project:
ENCODE
Series
ENCSR217ARS
released
Reference epigenome series
in hepatocyte
(
Homo sapiens
, embryonic, 5 day
)
Targets:
H3K27me3, H3K4me1, H3K36me3, H3K27ac, H3K9me3, Control, H3K4me3
Lab:
ENCODE Consortium
Project:
ENCODE
Series
ENCSR377TON
archived
Audit warning
2
Reference epigenome series
(
Homo sapiens
)
Targets:
H3K27me3, H3K4me1, H3K36me3, H3K27ac, H3K9me3, Control, H3K4me2, H3K9ac, H3K79me2, H2AFZ, H3K4me3, H4K20me1
Lab:
Anshul Kundaje, Stanford
Project:
Roadmap
Series
ENCSR820QMS
released
Reference epigenome series
in H1-hESC
(
Homo sapiens
, embryonic
)
Targets:
H3K27me3, H3K4me1, H3K36me3, H3K27ac, H3K9me3, Control, H3K4me3
Lab:
ENCODE Consortium
Project:
ENCODE