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  • proliferation CRISPR screen in DNA cloning sample
    Functional characterization series for tiling CRIPSRi proliferation screens at genome-wide cCREs essential for neuronal differentiation
    Assays: proliferation CRISPR screen
    Lab: Yin Shen, UCSF
    Project: ENCODE
    Elements selection method: accessible genome regions, histone modifications, essential genes
    Series
    ENCSR737MRW
    released
  • MPRA in DNA cloning sample
    These MPRA datasets test a mix of short, medium, and long elements cloned into the pGL4 vector upstream of a minimal promoter.
    Assays: MPRA
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Elements selection method: DNase hypersensitive sites
    Series
    ENCSR643SGO
    released
  • MPRA in DNA cloning sample
    These MPRA datasets test the same set of elements cloned into the pGL4 vector upstream of a minimal promoter in both the forward and reverse orientations in parallel.
    Assays: MPRA
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Elements selection method: DNase hypersensitive sites
    Series
    ENCSR473OOU
    released
  • MPRA in DNA cloning sample
    These MPRA datasets screen a library of 2,440 candidate liver enhancers and controls for regulatory activity in HepG2 cells using nine different MPRA designs.
    Assays: MPRA
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Elements selection method: DNase hypersensitive sites
    Series
    ENCSR033VBW
    released