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Clear Filters
Assay title
  • CRISPR disruption screen
    8
  • Control CRISPR screen
    5
  • CRISPR interference screen
    3
Status
  • released
    16
Target category
  • transcription factor
    4
  • chromatin remodeler
    1
Target of assay
  • Esrrb
    2
  • Sox2
    2
  • Dppa2
    1
Organism
  • Homo sapiens
    8
  • Mus musculus
    8
Biosample classification
Selected filters:
cell line
  • cell line
    16
  • cloning host
    4
Biosample term name
  • F123
    8
  • WTC11
    8
Organ
  • embryo
    8
  • skin of body
    8
Cell
  • stem cell
    16
  • fibroblast
    8
  • induced pluripotent stem cell
    8
Life stage
  • adult
    8
  • unknown
    8
Biosample treatment
  • tioguanine
    6
Project
  • ENCODE
    16
RFA
  • ENCODE4
    16
Available file types
  • fastq
    16
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    3
Platform
  • Illumina HiSeq 4000
    8
  • Illumina NovaSeq 6000
    8
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  • paired-ended
    8
  • single-ended
    8
Read length (nt)
  • 50
    8
  • 100
    3
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    5
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  • DNA
    16
Lab
Selected filters:
Yin Shen, UCSF
  • Jesse Engreitz, Stanford
    270
  • Bing Ren, UCSD
    20
  • Will Greenleaf, Stanford
    19
  • Yin Shen, UCSF
    16
  • Kevin White, UChicago
    6
  • Tim Reddy, Duke
    5
  • Haiyuan Yu, Cornell
    2
Replication type
  • isogenic
    16
Audit category:
  • missing genetic modification reagents
    16
  • lacking processed data
    13
  • missing analysis_step_run
    3

Showing 16 of 16 results

Report
  • CRISPR disruption screen of WTC11
    Homo sapiens WTC11 genetically modified using CRISPR, transduction treated with 240 ng/mL tioguanine for 7 days
    Lab: Yin Shen, UCSF
    Project: ENCODE
    Treatment: tioguanine (CHEBI:9555) for 7 days
    Functional Characterization Experiment
    ENCSR482PHH
    released
  • CRISPR disruption screen of WTC11
    Homo sapiens WTC11 genetically modified using CRISPR, transduction treated with 160 ng/mL tioguanine for 7 days
    Lab: Yin Shen, UCSF
    Project: ENCODE
    Treatment: tioguanine (CHEBI:9555) for 7 days
    Functional Characterization Experiment
    ENCSR071ZGB
    released
  • CRISPR disruption screen of WTC11
    Homo sapiens WTC11 genetically modified using CRISPR, transduction treated with 80 ng/mL tioguanine for 7 days
    Lab: Yin Shen, UCSF
    Project: ENCODE
    Treatment: tioguanine (CHEBI:9555) for 7 days
    Functional Characterization Experiment
    ENCSR117YGQ
    released
  • CRISPR interference screen of WTC11
    Homo sapiens WTC11 genetically modified using CRISPR, transduction treated with 240 ng/mL tioguanine for 7 days
    Lab: Yin Shen, UCSF
    Project: ENCODE
    Treatment: tioguanine (CHEBI:9555) for 7 days
    Functional Characterization Experiment
    ENCSR793DSE
    released
  • CRISPR interference screen of WTC11
    Homo sapiens WTC11 genetically modified using CRISPR, transduction treated with 160 ng/mL tioguanine for 7 days
    Lab: Yin Shen, UCSF
    Project: ENCODE
    Treatment: tioguanine (CHEBI:9555) for 7 days
    Functional Characterization Experiment
    ENCSR254SJU
    released
  • CRISPR interference screen of WTC11
    Homo sapiens WTC11 genetically modified using CRISPR, transduction treated with 80 ng/mL tioguanine for 7 days
    Lab: Yin Shen, UCSF
    Project: ENCODE
    Treatment: tioguanine (CHEBI:9555) for 7 days
    Functional Characterization Experiment
    ENCSR900AXT
    released
  • Control CRISPR screen of WTC11
    Homo sapiens WTC11 genetically modified using CRISPR, transduction
    Lab: Yin Shen, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR250ZWC
    released
  • Control CRISPR screen of WTC11
    Homo sapiens WTC11 genetically modified using CRISPR, transduction
    Lab: Yin Shen, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR427OPP
    released
  • CRISPR disruption screen of F123
    Mus musculus Castaneus X S129/SvJae F123 genetically modified using CRISPR, transduction
    Target: Sox2
    Lab: Yin Shen, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR004TXD
    released
  • CRISPR disruption screen of F123
    Mus musculus Castaneus X S129/SvJae F123 genetically modified using CRISPR, transduction
    Target: Esrrb
    Lab: Yin Shen, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR063AQH
    released
  • CRISPR disruption screen of F123
    Mus musculus Castaneus X S129/SvJae F123 genetically modified using CRISPR, transduction
    Target: Sox2
    Lab: Yin Shen, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR897BBN
    released
  • CRISPR disruption screen of F123
    Mus musculus Castaneus X S129/SvJae F123 genetically modified using CRISPR, transduction
    Target: Esrrb
    Lab: Yin Shen, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR312ISP
    released
  • CRISPR disruption screen of F123
    Mus musculus Castaneus X S129/SvJae F123 genetically modified using CRISPR, transduction
    Target: Dppa2
    Lab: Yin Shen, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR552KGE
    released
  • Control CRISPR screen of F123
    Mus musculus Castaneus X S129/SvJae F123 genetically modified using CRISPR, transduction
    Lab: Yin Shen, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR097OCB
    released
  • Control CRISPR screen of F123
    Mus musculus Castaneus X S129/SvJae F123 genetically modified using CRISPR, transduction
    Lab: Yin Shen, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR180JKQ
    released
  • Control CRISPR screen of F123
    Mus musculus Castaneus X S129/SvJae F123 genetically modified using CRISPR, transduction
    Lab: Yin Shen, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR226EZK
    released
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