• Functional Genomics data
    • Experiment search
    • Experiment matrix
    • ChIP-seq matrix
    • Human body map
    • Functional genomics series
    • Functional Characterization data
    • High-throughput assays
    • In vivo validation assays
    • Cloud Resources
    • AWS Open Data
    • Collections
    • RNA-protein interactions (ENCORE)
    • Epigenomes from four individuals (ENTEx)
    • Stem Cell Development Matrix (SESCC)
    • Human reference epigenomes
    • Mouse reference epigenomes
    • Mouse development matrix
    • Search by region
    • Publications
    • About
    • Visualize (SCREEN)
    • Annotation matrix
    • Search
    • Methods
    • Antibodies
    • Genome references
    • Assays and standards
    • Glossary
    • File formats
    • Software tools
    • Pipelines
    • Data organization
    • Release policy
    • Schemas
    • Using the portal
    • Cart
    • REST API
    • Citing ENCODE
    • FAQ
    • Project Overview
    • Collaborations
    • ENCODE workshops
    • About the DCC
  • Sign in / Create account
Clear Filters
Assay title
  • CRISPR interference screen
    277
    Do not include items with this term
  • Control MPRA
    15
    Do not include items with this term
  • pooled clone sequencing
    11
    Do not include items with this term
  • CRISPR disruption screen
    8
    Do not include items with this term
  • CRISPR deletion screen
    7
    Do not include items with this term
  • Control CRISPR screen
    5
    Do not include items with this term
  • CRISPR activation screen
    4
    Do not include items with this term
  • CRISPR screen
    4
    Do not include items with this term
  • Control STARR-seq
    1
    Do not include items with this term
Status
  • released
    332
    Do not include items with this term
Target category
  • transcription factor
    4
    Do not include items with this term
  • chromatin remodeler
    1
    Do not include items with this term
Target of assay
  • Esrrb
    2
    Do not include items with this term
  • Sox2
    2
    Do not include items with this term
  • Dppa2
    1
    Do not include items with this term
Organism
  • Homo sapiens
    313
    Do not include items with this term
  • Mus musculus
    8
    Do not include items with this term
Biosample classification
  • cell line
    321
    Do not include items with this term
  • cloning host
    11
    Do not include items with this term
Biosample term name
Selected filters:
SW620
  • K562
    290
    Do not include items with this term
  • HepG2
    15
    Do not include items with this term
  • DNA cloning sample
    11
    Do not include items with this term
  • F123
    8
    Do not include items with this term
  • WTC11
    8
    Do not include items with this term
Organ
  • blood
    290
    Do not include items with this term
  • bodily fluid
    290
    Do not include items with this term
  • endocrine gland
    15
    Do not include items with this term
  • epithelium
    15
    Do not include items with this term
  • exocrine gland
    15
    Do not include items with this term
  • liver
    15
    Do not include items with this term
  • embryo
    8
    Do not include items with this term
  • skin of body
    8
    Do not include items with this term
Cell
  • cancer cell
    305
    Do not include items with this term
  • hematopoietic cell
    290
    Do not include items with this term
  • leukocyte
    290
    Do not include items with this term
  • stem cell
    16
    Do not include items with this term
  • epithelial cell
    15
    Do not include items with this term
  • fibroblast
    8
    Do not include items with this term
  • induced pluripotent stem cell
    8
    Do not include items with this term
Life stage
  • adult
    298
    Do not include items with this term
  • child
    15
    Do not include items with this term
  • unknown
    8
    Do not include items with this term
Biosample treatment
  • tioguanine
    6
    Do not include items with this term
Project
  • ENCODE
    331
    Do not include items with this term
  • GGR
    1
    Do not include items with this term
RFA
  • ENCODE4
    331
    Do not include items with this term
  • GGR
    1
    Do not include items with this term
Genome assembly
  • GRCh38
    3
    Do not include items with this term
Available file types
  • fastq
    332
    Do not include items with this term
  • csv
    10
    Do not include items with this term
  • bam
    3
    Do not include items with this term
  • bigWig
    3
    Do not include items with this term
  • tsv
    3
    Do not include items with this term
Platform
  • Illumina HiSeq 4000
    302
    Do not include items with this term
  • Illumina NextSeq 500
    18
    Do not include items with this term
  • Illumina NovaSeq 6000
    11
    Do not include items with this term
  • Illumina MiSeq
    2
    Do not include items with this term
Run type
  • single-ended
    300
    Do not include items with this term
  • paired-ended
    32
    Do not include items with this term
Read length (nt)
  • 10
    15
    Do not include items with this term
  • 15
    18
    Do not include items with this term
  • 21
    289
    Do not include items with this term
  • 50
    8
    Do not include items with this term
  • 51
    1
    Do not include items with this term
  • 80
    1
    Do not include items with this term
  • 100
    5
    Do not include items with this term
  • 146
    1
    Do not include items with this term
  • 147
    1
    Do not include items with this term
  • 149
    1
    Do not include items with this term
  • 150
    11
    Do not include items with this term
  • 213
    1
    Do not include items with this term
  • 241
    1
    Do not include items with this term
  • 361
    1
    Do not include items with this term
Library fragment size (nt)
Selected filters:
150-600
  • 200-210
    270
    Do not include items with this term
  • 10-20
    15
    Do not include items with this term
  • 200-600
    3
    Do not include items with this term
  • 150-600
  • 160-180
    1
    Do not include items with this term
  • 180-200
    1
    Do not include items with this term
  • 180-690
    1
    Do not include items with this term
  • 250-650
    1
    Do not include items with this term
  • >300
    1
    Do not include items with this term
Library material
Selected filters:
DNA
RNA
  • DNA
    332
  • RNA
Lab
  • Jesse Engreitz, Stanford
    270
    Do not include items with this term
  • Yin Shen, UCSF
    20
    Do not include items with this term
  • Will Greenleaf, Stanford
    19
    Do not include items with this term
  • Nadav Ahituv, UCSF
    18
    Do not include items with this term
  • Kevin White, UChicago
    3
    Do not include items with this term
  • Haiyuan Yu, Cornell
    1
    Do not include items with this term
  • Tim Reddy, Duke
    1
    Do not include items with this term
Replication type
  • isogenic
    256
    Do not include items with this term
  • unreplicated
    65
    Do not include items with this term
Audit category:
  • unreplicated experiment
    75
    Do not include items with this term
Audit category:
  • lacking processed data
    316
    Do not include items with this term
  • missing genetic modification reagents
    17
    Do not include items with this term
  • missing analysis_step_run
    3
    Do not include items with this term

Showing 25 of 332 results

Report
View All
  • Control MPRA of HepG2
    Homo sapiens HepG2 genetically modified using transient transfection
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR752EIG
    released
  • Control MPRA of HepG2
    Homo sapiens HepG2 genetically modified using transient transfection
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR360LZF
    released
  • Control MPRA of HepG2
    Homo sapiens HepG2 genetically modified using transduction
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR932ZCL
    released
  • Control MPRA of HepG2
    Homo sapiens HepG2 genetically modified using transduction
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR579XDB
    released
  • Control MPRA of HepG2
    Homo sapiens HepG2 genetically modified using transduction
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR990ZAU
    released
  • Control MPRA of HepG2
    Homo sapiens HepG2 genetically modified using transduction
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR742NIM
    released
  • Control MPRA of HepG2
    Homo sapiens HepG2 genetically modified using transduction
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR468WFP
    released
  • Control MPRA of HepG2
    Homo sapiens HepG2 genetically modified using transduction
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR902NRZ
    released
  • Control MPRA of HepG2
    Homo sapiens HepG2 genetically modified using transient transfection
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR335DOI
    released
  • Control MPRA of HepG2
    Homo sapiens HepG2 genetically modified using transient transfection
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR642ECM
    released
  • Control MPRA of HepG2
    Homo sapiens HepG2 genetically modified using transient transfection
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR118NBQ
    released
  • Control MPRA of HepG2
    Homo sapiens HepG2 genetically modified using transient transfection
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR547NTG
    released
  • Control MPRA of HepG2
    Homo sapiens HepG2 genetically modified using transient transfection
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR383FIW
    released
  • Control MPRA of HepG2
    Homo sapiens HepG2 genetically modified using transient transfection
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR974CHK
    released
  • Control MPRA of HepG2
    Homo sapiens HepG2 genetically modified using transient transfection
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR356YBY
    released
  • pooled clone sequencing of DNA cloning sample
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR192JMI
    released
  • pooled clone sequencing of DNA cloning sample
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR200NQW
    released
  • pooled clone sequencing of DNA cloning sample
    Lab: Nadav Ahituv, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR638VYO
    released
  • CRISPR interference screen of K562
    Homo sapiens K562 genetically modified using CRISPR, transduction
    Lab: Jesse Engreitz, Stanford
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR882TBK
    released
  • CRISPR interference screen of K562
    Homo sapiens K562 genetically modified using CRISPR, transduction
    Lab: Jesse Engreitz, Stanford
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR175LLP
    released
  • CRISPR interference screen of K562
    Homo sapiens K562 genetically modified using CRISPR, transduction
    Lab: Jesse Engreitz, Stanford
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR985WIZ
    released
  • CRISPR interference screen of K562
    Homo sapiens K562 genetically modified using CRISPR, transduction
    Lab: Jesse Engreitz, Stanford
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR093NTC
    released
  • CRISPR interference screen of K562
    Homo sapiens K562 genetically modified using CRISPR, transduction
    Lab: Jesse Engreitz, Stanford
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR091SDN
    released
  • CRISPR interference screen of K562
    Homo sapiens K562 genetically modified using CRISPR, transduction
    Lab: Jesse Engreitz, Stanford
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR194IJO
    released
  • CRISPR interference screen of K562
    Homo sapiens K562 genetically modified using CRISPR, transduction
    Lab: Jesse Engreitz, Stanford
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR860XBD
    released
  • Citing ENCODE
  • Privacy
  • Contact
  • Sign in / Create account
  • ENCODE
  • Stanford University
  • Creative Commons

©2021 Stanford University