• Functional Genomics data
    • Experiment search
    • Experiment matrix
    • ChIP-seq matrix
    • Human body map
    • Functional genomics series
    • Functional Characterization data
    • High-throughput assays
    • In vivo validation assays
    • Cloud Resources
    • AWS Open Data
    • Collections
    • RNA-protein interactions (ENCORE)
    • Epigenomes from four individuals (ENTEx)
    • Stem Cell Development Matrix (SESCC)
    • Human reference epigenomes
    • Mouse reference epigenomes
    • Mouse development matrix
    • Search by region
    • Publications
    • About
    • Visualize (SCREEN)
    • Annotation matrix
    • Search
    • Methods
    • Antibodies
    • Genome references
    • Assays and standards
    • Glossary
    • File formats
    • Software tools
    • Pipelines
    • Data organization
    • Release policy
    • Schemas
    • Using the portal
    • Cart
    • REST API
    • Citing ENCODE
    • FAQ
    • Project Overview
    • Collaborations
    • ENCODE workshops
    • About the DCC
  • Sign in / Create account
Clear Filters
Assay title
  • STARR-seq
    6
    Do not include items with this term
  • CRISPR interference screen
    2
    Do not include items with this term
  • Control CRISPR screen
    2
    Do not include items with this term
Status
  • released
    10
    Do not include items with this term
Organism
Selected filters:
Homo sapiens
  • Homo sapiens
    10
Biosample classification
  • cell line
    10
    Do not include items with this term
Biosample term name
  • A549
    8
    Do not include items with this term
  • NCI-H460
    2
    Do not include items with this term
Organ
Selected filters:
lung
  • epithelium
    16
    Do not include items with this term
  • lung
    10
  • exocrine gland
    8
    Do not include items with this term
  • colon
    5
    Do not include items with this term
  • intestine
    5
    Do not include items with this term
  • large intestine
    5
    Do not include items with this term
  • mammary gland
    5
    Do not include items with this term
  • prostate gland
    4
    Do not include items with this term
  • blood
    3
    Do not include items with this term
  • bodily fluid
    3
    Do not include items with this term
  • endocrine gland
    3
    Do not include items with this term
  • liver
    3
    Do not include items with this term
  • skin of body
    3
    Do not include items with this term
  • bone element
    1
    Do not include items with this term
  • bone marrow
    1
    Do not include items with this term
Cell
  • cancer cell
    10
    Do not include items with this term
  • epithelial cell
    2
    Do not include items with this term
Life stage
  • adult
    8
    Do not include items with this term
  • unknown
    2
    Do not include items with this term
Biosample treatment
  • dexamethasone
    4
    Do not include items with this term
Project
  • ENCODE
    5
    Do not include items with this term
  • GGR
    5
    Do not include items with this term
RFA
  • ENCODE4
    5
    Do not include items with this term
  • GGR
    5
    Do not include items with this term
Genome assembly
  • GRCh38
    1
    Do not include items with this term
Available file types
  • fastq
    10
    Do not include items with this term
  • bam
    1
    Do not include items with this term
  • bed bed6+
    1
    Do not include items with this term
  • bigBed bed6+
    1
    Do not include items with this term
  • bigWig
    1
    Do not include items with this term
Platform
  • Illumina HiSeq 4000
    10
    Do not include items with this term
Run type
  • paired-ended
    10
    Do not include items with this term
Read length (nt)
Selected filters:
51
100
  • 51
    5
  • 100
    5
Library fragment size (nt)
  • >300
    5
    Do not include items with this term
  • 710-720
    4
    Do not include items with this term
  • 200-600
    1
    Do not include items with this term
Library material
  • RNA
    10
    Do not include items with this term
Lab
  • Tim Reddy, Duke
    5
    Do not include items with this term
  • Bing Ren, UCSD
    4
    Do not include items with this term
  • Kevin White, UChicago
    1
    Do not include items with this term
Replication type
  • isogenic
    10
    Do not include items with this term
Audit category:
  • lacking processed data
    9
    Do not include items with this term
  • missing genetic modification reagents
    9
    Do not include items with this term

Showing 10 of 10 results

Report
  • CRISPR interference screen of NCI-H460
    Homo sapiens NCI-H460 genetically modified using transduction, CRISPR
    Lab: Bing Ren, UCSD
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR515OUJ
    released
  • CRISPR interference screen of A549
    Homo sapiens A549 genetically modified using transduction, CRISPR
    Lab: Bing Ren, UCSD
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR621FIC
    released
  • Control CRISPR screen of NCI-H460
    Homo sapiens NCI-H460 genetically modified using transduction, CRISPR
    Lab: Bing Ren, UCSD
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR513PAU
    released
  • Control CRISPR screen of A549
    Homo sapiens A549 genetically modified using transduction, CRISPR
    Lab: Bing Ren, UCSD
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR330GSS
    released
  • STARR-seq of A549
    Homo sapiens A549 genetically modified using transient transfection treated with 100 nM dexamethasone for 12 hours
    Lab: Tim Reddy, Duke
    Project: GGR
    Treatment: 100 nM dexamethasone (CHEBI:41879) for 12 hours
    Functional Characterization Experiment
    ENCSR220FPS
    released
  • STARR-seq of A549
    Homo sapiens A549 genetically modified using transient transfection treated with 100 nM dexamethasone for 8 hours
    Lab: Tim Reddy, Duke
    Project: GGR
    Treatment: 100 nM dexamethasone (CHEBI:41879) for 8 hours
    Functional Characterization Experiment
    ENCSR426EKB
    released
  • STARR-seq of A549
    Homo sapiens A549 genetically modified using transient transfection treated with 100 nM dexamethasone for 4 hours
    Lab: Tim Reddy, Duke
    Project: GGR
    Treatment: 100 nM dexamethasone (CHEBI:41879) for 4 hours
    Functional Characterization Experiment
    ENCSR418VQU
    released
  • STARR-seq of A549
    Homo sapiens A549 genetically modified using transient transfection treated with 100 nM dexamethasone for 1 hour
    Lab: Tim Reddy, Duke
    Project: GGR
    Treatment: 100 nM dexamethasone (CHEBI:41879) for 1 hour
    Functional Characterization Experiment
    ENCSR646KIT
    released
  • STARR-seq of A549
    Homo sapiens A549 genetically modified using transient transfection
    Lab: Tim Reddy, Duke
    Project: GGR
    Functional Characterization Experiment
    ENCSR292EDU
    released
  • STARR-seq of A549
    Homo sapiens A549 genetically modified using transient transfection
    Lab: Kevin White, UChicago
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR895FDL
    released
  • Citing ENCODE
  • Privacy
  • Contact
  • Sign in / Create account
  • ENCODE
  • Stanford University
  • Creative Commons

©2021 Stanford University