• Functional Genomics data
    • Experiment search
    • Experiment matrix
    • ChIP-seq matrix
    • Human body map
    • Functional genomics series
    • Functional Characterization data
    • High-throughput assays
    • In vivo validation assays
    • Cloud Resources
    • AWS Open Data
    • Collections
    • RNA-protein interactions (ENCORE)
    • Epigenomes from four individuals (ENTEx)
    • Stem Cell Development Matrix (SESCC)
    • Human reference epigenomes
    • Mouse reference epigenomes
    • Mouse development matrix
    • Search by region
    • Publications
    • About
    • Visualize (SCREEN)
    • Annotation matrix
    • Search
    • Methods
    • Antibodies
    • Genome references
    • Assays and standards
    • Glossary
    • File formats
    • Software tools
    • Pipelines
    • Data organization
    • Release policy
    • Schemas
    • Using the portal
    • Cart
    • REST API
    • Citing ENCODE
    • FAQ
    • Project Overview
    • Collaborations
    • ENCODE workshops
    • About the DCC
  • Sign in / Create account
Clear Filters
Assay title
Selected filters:
STARR-seq
  • CRISPR interference screen
    10
    Do not include items with this term
  • Control CRISPR screen
    10
    Do not include items with this term
  • STARR-seq
  • pooled clone sequencing
    6
    Do not include items with this term
Status
  • released
    26
    Do not include items with this term
Organism
  • Homo sapiens
    20
    Do not include items with this term
Biosample classification
  • cell line
    20
    Do not include items with this term
  • cloning host
    6
    Do not include items with this term
Biosample term name
  • DNA cloning sample
    6
    Do not include items with this term
  • A549
    2
    Do not include items with this term
  • DU 145
    2
    Do not include items with this term
  • HCT116
    2
    Do not include items with this term
  • HepG2
    2
    Do not include items with this term
  • K562
    2
    Do not include items with this term
  • MCF-7
    2
    Do not include items with this term
  • MDA-MB-231
    2
    Do not include items with this term
  • NCI-H460
    2
    Do not include items with this term
  • PC-3
    2
    Do not include items with this term
  • SW620
    2
    Do not include items with this term
Organ
  • epithelium
    12
    Do not include items with this term
  • exocrine gland
    6
    Do not include items with this term
  • colon
    4
    Do not include items with this term
  • intestine
    4
    Do not include items with this term
  • large intestine
    4
    Do not include items with this term
  • lung
    4
    Do not include items with this term
  • mammary gland
    4
    Do not include items with this term
  • prostate gland
    4
    Do not include items with this term
  • blood
    2
    Do not include items with this term
  • bodily fluid
    2
    Do not include items with this term
  • endocrine gland
    2
    Do not include items with this term
  • liver
    2
    Do not include items with this term
Cell
  • cancer cell
    20
    Do not include items with this term
  • epithelial cell
    12
    Do not include items with this term
  • hematopoietic cell
    2
    Do not include items with this term
  • leukocyte
    2
    Do not include items with this term
Life stage
  • adult
    16
    Do not include items with this term
  • child
    2
    Do not include items with this term
  • unknown
    2
    Do not include items with this term
Project
  • ENCODE
    25
    Do not include items with this term
  • GGR
    1
    Do not include items with this term
RFA
  • ENCODE4
    25
    Do not include items with this term
  • GGR
    1
    Do not include items with this term
Genome assembly
  • GRCh38
    3
    Do not include items with this term
Available file types
  • fastq
    26
    Do not include items with this term
  • bam
    3
    Do not include items with this term
  • bigWig
    3
    Do not include items with this term
Platform
Selected filters:
Illumina HiSeq 4000
  • Illumina NextSeq 500
    33
    Do not include items with this term
  • Illumina HiSeq 4000
    26
  • Illumina NovaSeq 6000
    8
    Do not include items with this term
  • Illumina MiSeq
    2
    Do not include items with this term
Run type
Selected filters:
paired-ended
  • single-ended
    297
    Do not include items with this term
  • paired-ended
    26
Read length (nt)
  • 50
    1
    Do not include items with this term
  • 51
    1
    Do not include items with this term
  • 100
    22
    Do not include items with this term
  • 150
    2
    Do not include items with this term
Library fragment size (nt)
  • 710-720
    21
    Do not include items with this term
  • 200-600
    3
    Do not include items with this term
  • >300
    1
    Do not include items with this term
Library material
  • RNA
    21
    Do not include items with this term
  • DNA
    5
    Do not include items with this term
Lab
  • Bing Ren, UCSD
    21
    Do not include items with this term
  • Kevin White, UChicago
    3
    Do not include items with this term
  • Tim Reddy, Duke
    1
    Do not include items with this term
  • Yin Shen, UCSF
    1
    Do not include items with this term
Replication type
  • isogenic
    20
    Do not include items with this term
Audit category:
  • unreplicated experiment
    4
    Do not include items with this term
Audit category:
  • lacking processed data
    23
    Do not include items with this term
  • missing genetic modification reagents
    20
    Do not include items with this term

Showing 25 of 26 results

Report
View All
  • pooled clone sequencing of DNA cloning sample
    Lab: Yin Shen, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR617AZY
    released
  • CRISPR interference screen of PC-3
    Homo sapiens PC-3 genetically modified using transduction, CRISPR
    Lab: Bing Ren, UCSD
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR282ELB
    released
  • CRISPR interference screen of DU 145
    Homo sapiens DU 145 genetically modified using transduction, CRISPR
    Lab: Bing Ren, UCSD
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR984PEG
    released
  • CRISPR interference screen of NCI-H460
    Homo sapiens NCI-H460 genetically modified using transduction, CRISPR
    Lab: Bing Ren, UCSD
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR515OUJ
    released
  • CRISPR interference screen of A549
    Homo sapiens A549 genetically modified using transduction, CRISPR
    Lab: Bing Ren, UCSD
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR621FIC
    released
  • CRISPR interference screen of MDA-MB-231
    Homo sapiens MDA-MB-231 genetically modified using transduction, CRISPR
    Lab: Bing Ren, UCSD
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR730NOM
    released
  • CRISPR interference screen of MCF-7
    Homo sapiens MCF-7 genetically modified using transduction, CRISPR
    Lab: Bing Ren, UCSD
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR325WCA
    released
  • CRISPR interference screen of HepG2
    Homo sapiens HepG2 genetically modified using transduction, CRISPR
    Lab: Bing Ren, UCSD
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR694XBP
    released
  • CRISPR interference screen of SW620
    Homo sapiens SW620 genetically modified using transduction, CRISPR
    Lab: Bing Ren, UCSD
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR259XOO
    released
  • CRISPR interference screen of HCT116
    Homo sapiens HCT116 genetically modified using transduction, CRISPR
    Lab: Bing Ren, UCSD
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR901RFR
    released
  • CRISPR interference screen of K562
    Homo sapiens K562 genetically modified using transduction, CRISPR
    Lab: Bing Ren, UCSD
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR546TAV
    released
  • Control CRISPR screen of PC-3
    Homo sapiens PC-3 genetically modified using transduction, CRISPR
    Lab: Bing Ren, UCSD
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR325SWE
    released
  • Control CRISPR screen of DU 145
    Homo sapiens DU 145 genetically modified using transduction, CRISPR
    Lab: Bing Ren, UCSD
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR193FCX
    released
  • Control CRISPR screen of NCI-H460
    Homo sapiens NCI-H460 genetically modified using transduction, CRISPR
    Lab: Bing Ren, UCSD
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR513PAU
    released
  • Control CRISPR screen of A549
    Homo sapiens A549 genetically modified using transduction, CRISPR
    Lab: Bing Ren, UCSD
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR330GSS
    released
  • Control CRISPR screen of MDA-MB-231
    Homo sapiens MDA-MB-231 genetically modified using transduction, CRISPR
    Lab: Bing Ren, UCSD
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR752LKV
    released
  • Control CRISPR screen of MCF-7
    Homo sapiens MCF-7 genetically modified using transduction, CRISPR
    Lab: Bing Ren, UCSD
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR198LPZ
    released
  • Control CRISPR screen of HepG2
    Homo sapiens HepG2 genetically modified using transduction, CRISPR
    Lab: Bing Ren, UCSD
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR362QSD
    released
  • Control CRISPR screen of SW620
    Homo sapiens SW620 genetically modified using transduction, CRISPR
    Lab: Bing Ren, UCSD
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR053SNW
    released
  • Control CRISPR screen of HCT116
    Homo sapiens HCT116 genetically modified using transduction, CRISPR
    Lab: Bing Ren, UCSD
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR393DOW
    released
  • Control CRISPR screen of K562
    Homo sapiens K562 genetically modified using transduction, CRISPR
    Lab: Bing Ren, UCSD
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR819UNC
    released
  • pooled clone sequencing of DNA cloning sample
    Lab: Bing Ren, UCSD
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR772AWX
    released
  • pooled clone sequencing of DNA cloning sample
    Lab: Tim Reddy, Duke
    Project: GGR
    Functional Characterization Experiment
    ENCSR652MCH
    released
  • pooled clone sequencing of DNA cloning sample
    Lab: Kevin White, UChicago
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR024WBS
    released
  • pooled clone sequencing of DNA cloning sample
    Lab: Kevin White, UChicago
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR316NSE
    released
  • Citing ENCODE
  • Privacy
  • Contact
  • Sign in / Create account
  • ENCODE
  • Stanford University
  • Creative Commons

©2021 Stanford University