• Functional Genomics data
    • Experiment search
    • Experiment matrix
    • ChIP-seq matrix
    • Human body map
    • Functional Characterization data
    • High-throughput assays
    • In vivo validation assays
    • Cloud Resources
    • AWS Open Data
    • Collections
    • RNA-protein interactions (ENCORE)
    • Epigenomes from four individuals (ENTEx)
    • Stem Cell Development Matrix (SESCC)
    • Human reference epigenomes
    • Mouse reference epigenomes
    • Mouse development matrix
    • Search by region
    • Publications
    • About
    • Visualize (SCREEN)
    • Annotation matrix
    • Search
    • Methods
    • Antibodies
    • Genome references
    • Assays and standards
    • File formats
    • Software tools
    • Pipelines
    • Data organization
    • Release policy
    • Schemas
    • Using the portal
    • Cart
    • REST API
    • Citing ENCODE
    • FAQ
    • Project Overview
    • Collaborations
    • ENCODE workshops
    • About the DCC
Clear Filters
Assay title
  • pooled clone sequencing
    6
  • CRISPR interference screen
    2
  • Control CRISPR screen
    2
  • STARR-seq
    2
Status
  • released
    12
Organism
  • Homo sapiens
    6
Biosample classification
  • cell line
    6
  • cloning host
    6
Biosample term name
  • DNA cloning sample
    6
  • HepG2
    3
  • NCI-H460
    2
  • SH-SY5Y
    1
Organ
  • epithelium
    6
  • endocrine gland
    3
  • exocrine gland
    3
  • liver
    3
  • lung
    2
  • bone element
    1
  • bone marrow
    1
Cell
  • epithelial cell
    6
  • cancer cell
    5
Life stage
Selected filters:
adult
  • adult
  • child
    4
  • unknown
    2
Project
Selected filters:
GGR
ENCODE
  • ENCODE
    11
  • GGR
    1
RFA
  • ENCODE4
    11
  • GGR
    1
Genome assembly
  • GRCh38
    5
Available file types
  • fastq
    12
  • bam
    5
  • bigWig
    5
  • bed bed6+
    2
  • bigBed bed6+
    2
Platform
  • Illumina HiSeq 4000
    12
Run type
Selected filters:
paired-ended
  • paired-ended
    12
  • single-ended
    11
Read length (nt)
  • 50
    1
  • 51
    1
  • 100
    8
  • 150
    2
Library fragment size (nt)
  • 200-600
    5
  • 710-720
    5
  • >300
    1
Library material
  • RNA
    7
  • DNA
    5
Lab
  • Bing Ren, UCSD
    5
  • Kevin White, UChicago
    5
  • Tim Reddy, Duke
    1
  • Yin Shen, UCSF
    1
Replication type
  • isogenic
    6
Audit category:
  • unreplicated experiment
    4
Audit category:
Selected filters:
missing analysis_step_run
  • lacking processed data
    7
  • missing genetic modification reagents
    4

Showing 12 of 12 results

Report
  • pooled clone sequencing of DNA cloning sample
    Lab: Yin Shen, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR617AZY
    released
  • CRISPR interference screen of NCI-H460
    Homo sapiens NCI-H460 genetically modified using CRISPR, transduction
    Lab: Bing Ren, UCSD
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR515OUJ
    released
  • CRISPR interference screen of HepG2
    Homo sapiens HepG2 genetically modified using CRISPR, transduction
    Lab: Bing Ren, UCSD
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR694XBP
    released
  • Control CRISPR screen of NCI-H460
    Homo sapiens NCI-H460 genetically modified using CRISPR, transduction
    Lab: Bing Ren, UCSD
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR513PAU
    released
  • Control CRISPR screen of HepG2
    Homo sapiens HepG2 genetically modified using CRISPR, transduction
    Lab: Bing Ren, UCSD
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR362QSD
    released
  • pooled clone sequencing of DNA cloning sample
    Lab: Bing Ren, UCSD
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR772AWX
    released
  • pooled clone sequencing of DNA cloning sample
    Lab: Tim Reddy, Duke
    Project: GGR
    Functional Characterization Experiment
    ENCSR652MCH
    released
  • STARR-seq of SH-SY5Y
    Homo sapiens SH-SY5Y genetically modified using transient transfection
    Lab: Kevin White, UChicago
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR983SZZ
    released
  • STARR-seq of HepG2
    Homo sapiens HepG2 genetically modified using transient transfection
    Lab: Kevin White, UChicago
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR135NXN
    released
  • pooled clone sequencing of DNA cloning sample
    Lab: Kevin White, UChicago
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR024WBS
    released
  • pooled clone sequencing of DNA cloning sample
    Lab: Kevin White, UChicago
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR316NSE
    released
  • pooled clone sequencing of DNA cloning sample
    Lab: Kevin White, UChicago
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR002ZDU
    released
  • Citing ENCODE
  • Privacy
  • Contact
  • Sign in
  • ENCODE
  • Stanford University
  • Creative Commons

©2021 Stanford University