• Functional Genomics data
    • Experiment search
    • Experiment matrix
    • ChIP-seq matrix
    • Human body map
    • Functional Characterization data
    • High-throughput assays
    • In vivo validation assays
    • Cloud Resources
    • AWS Open Data
    • Collections
    • RNA-protein interactions (ENCORE)
    • Epigenomes from four individuals (ENTEx)
    • Stem Cell Development Matrix (SESCC)
    • Human reference epigenomes
    • Mouse reference epigenomes
    • Mouse development matrix
    • Search by region
    • Publications
    • About
    • Visualize (SCREEN)
    • Annotation matrix
    • Search
    • Methods
    • Antibodies
    • Genome references
    • Assays and standards
    • Glossary
    • File formats
    • Software tools
    • Pipelines
    • Data organization
    • Release policy
    • Schemas
    • Using the portal
    • Cart
    • REST API
    • Citing ENCODE
    • FAQ
    • Project Overview
    • Collaborations
    • ENCODE workshops
    • About the DCC
  • Sign in / Create account
Clear Filters
Assay title
Selected filters:
CRISPR deletion screen
  • CRISPR disruption screen
    7
  • Control CRISPR screen
    5
  • pooled clone sequencing
    4
  • CRISPR interference screen
    1
Status
  • released
    17
Target category
  • transcription factor
    4
  • chromatin remodeler
    1
Target of assay
  • Esrrb
    2
  • Sox2
    2
  • Dppa2
    1
Organism
  • Mus musculus
    8
  • Homo sapiens
    5
Biosample classification
  • cell line
    13
  • cloning host
    4
Biosample term name
  • F123
    8
  • WTC11
    5
  • DNA cloning sample
    4
Organ
  • embryo
    8
  • skin of body
    5
Cell
  • stem cell
    13
  • fibroblast
    5
  • induced pluripotent stem cell
    5
Life stage
  • unknown
    8
  • adult
    5
Biosample treatment
  • tioguanine
    3
Project
  • ENCODE
    17
RFA
  • ENCODE4
    17
Available file types
  • fastq
    17
Platform
  • Illumina HiSeq 4000
    9
  • Illumina NovaSeq 6000
    8
Run type
  • single-ended
    11
  • paired-ended
    6
Read length (nt)
  • 50
    8
  • 150
    9
Library material
  • DNA
    17
Lab
Selected filters:
Yin Shen, UCSF
  • Jesse Engreitz, Stanford
    270
  • Bing Ren, UCSD
    21
  • Yin Shen, UCSF
    17
  • Tim Reddy, Duke
    6
  • Will Greenleaf, Stanford
    6
Replication type
  • isogenic
    13
Audit category:
  • unreplicated experiment
    4
Audit category:
Selected filters:
lacking processed data
  • lacking processed data
    17
  • missing genetic modification reagents
    16
  • missing analysis_step_run
    3

Showing 17 of 17 results

Report
  • CRISPR disruption screen of WTC11
    Homo sapiens WTC11 genetically modified using transduction, CRISPR treated with 240 ng/mL tioguanine for 7 days
    Lab: Yin Shen, UCSF
    Project: ENCODE
    Treatment: tioguanine (CHEBI:9555) for 7 days
    Functional Characterization Experiment
    ENCSR482PHH
    released
  • CRISPR disruption screen of WTC11
    Homo sapiens WTC11 genetically modified using transduction, CRISPR treated with 80 ng/mL tioguanine for 7 days
    Lab: Yin Shen, UCSF
    Project: ENCODE
    Treatment: tioguanine (CHEBI:9555) for 7 days
    Functional Characterization Experiment
    ENCSR117YGQ
    released
  • CRISPR interference screen of WTC11
    Homo sapiens WTC11 genetically modified using transduction, CRISPR treated with 80 ng/mL tioguanine for 7 days
    Lab: Yin Shen, UCSF
    Project: ENCODE
    Treatment: tioguanine (CHEBI:9555) for 7 days
    Functional Characterization Experiment
    ENCSR900AXT
    released
  • Control CRISPR screen of WTC11
    Homo sapiens WTC11 genetically modified using transduction, CRISPR
    Lab: Yin Shen, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR250ZWC
    released
  • Control CRISPR screen of WTC11
    Homo sapiens WTC11 genetically modified using transduction, CRISPR
    Lab: Yin Shen, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR427OPP
    released
  • pooled clone sequencing of DNA cloning sample
    Lab: Yin Shen, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR617AZY
    released
  • CRISPR disruption screen of F123
    Mus musculus Castaneus X S129/SvJae F123 genetically modified using transduction, CRISPR
    Target: Sox2
    Lab: Yin Shen, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR004TXD
    released
  • CRISPR disruption screen of F123
    Mus musculus Castaneus X S129/SvJae F123 genetically modified using transduction, CRISPR
    Target: Esrrb
    Lab: Yin Shen, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR063AQH
    released
  • CRISPR disruption screen of F123
    Mus musculus Castaneus X S129/SvJae F123 genetically modified using transduction, CRISPR
    Target: Sox2
    Lab: Yin Shen, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR897BBN
    released
  • CRISPR disruption screen of F123
    Mus musculus Castaneus X S129/SvJae F123 genetically modified using transduction, CRISPR
    Target: Esrrb
    Lab: Yin Shen, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR312ISP
    released
  • CRISPR disruption screen of F123
    Mus musculus Castaneus X S129/SvJae F123 genetically modified using transduction, CRISPR
    Target: Dppa2
    Lab: Yin Shen, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR552KGE
    released
  • Control CRISPR screen of F123
    Mus musculus Castaneus X S129/SvJae F123 genetically modified using transduction, CRISPR
    Lab: Yin Shen, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR097OCB
    released
  • Control CRISPR screen of F123
    Mus musculus Castaneus X S129/SvJae F123 genetically modified using transduction, CRISPR
    Lab: Yin Shen, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR180JKQ
    released
  • Control CRISPR screen of F123
    Mus musculus Castaneus X S129/SvJae F123 genetically modified using transduction, CRISPR
    Lab: Yin Shen, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR226EZK
    released
  • pooled clone sequencing of DNA cloning sample
    Lab: Yin Shen, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR919NIR
    released
  • pooled clone sequencing of DNA cloning sample
    Lab: Yin Shen, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR215PWC
    released
  • pooled clone sequencing of DNA cloning sample
    Lab: Yin Shen, UCSF
    Project: ENCODE
    Functional Characterization Experiment
    ENCSR147EBW
    released
  • Citing ENCODE
  • Privacy
  • Contact
  • Sign in / Create account
  • ENCODE
  • Stanford University
  • Creative Commons

©2021 Stanford University